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World-2DPAGE Repository
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SWISS-2DPAGE
World-2DPAGE Portal
Exclude local DBs
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Searching in 'World-2DPAGE Repository [0004]' for entry
matching:
O08651
World-2DPAGE Repository
(0004):
O08651
O08651
General information about the entry
View entry in simple text format
Entry name
SERA_RAT
Primary accession number
O08651
integrated into World-2DPAGE Repository (0004) on
October 13, 2008 (release 1)
2D Annotations were last modified on
May 18, 2011 (version 2)
General Annotations were last modified on
December 22, 2011 (version 2)
Name and origin of the protein
Description
RecName: Full=D-3-phosphoglycerate dehydrogenase; Short=3-PGDH; EC=1.1.1.95;.
Gene name
Name=Phgdh
Annotated species
Rattus norvegicus (Rat) [TaxID:
10116
]
Taxonomy
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus.
References
[1]
MAPPING ON GEL
PubMed=19343716; DOI=
10.1002/pmic.200800664
; [
NCBI
,
EBI
,
Israel
,
Japan
]
Maurya D.K., Sundaram C.S., Bhargava P.
''Proteome profile of the mature rat olfactory bulb''
Proteomics 9(1):2593-2599 (2009)
2D PAGE maps for identified proteins
How to interpret a protein
OB21DSUB
{2-DE gel for Olfactory bulb proteome}
Rattus norvegicus (Rat)
Tissue: Olfactory bulb
map experimental info
OB21DSUB
MAP LOCATIONS:
SPOT 311
:
pI=6.33; Mw=54000
[identification data]
MAPPING (identification):
SPOT
311
:
Peptide mass fingerprinting
[
1
];
Tandem mass spectrometry
[
1
].
Copyright
Data from Dr. Purnima Bhargava, Centre for Cellular and Molecular Biology, India
Cross-references
UniProtKB/Swiss-Prot
O08651; SERA_RAT.
2D PAGE maps for identified proteins
How to interpret a protein map
You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
Warning 1
: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
Warning 2
: the 2D PAGE map is built on demand. This may take some few seconds to be computed.
External data extracted from
UniProtKB/Swiss-Prot
Extracted from
UniProtKB/Swiss-Prot
, release:
2011_12
Entry name
SERA_RAT
Primary accession number
O08651
Secondary accession number(s)
Q546Q9
Sequence was last modified on
January 23, 2007 (version 3)
Annotations were last modified on
November 16, 2011 (version 100)
Name and origin of the protein
Description
RecName: Full=D-3-phosphoglycerate dehydrogenase; Short=3-PGDH; EC=1.1.1.95;
Gene name
Name=Phgdh
Encoded on
Name=Phgdh
Keywords
Acetylation
;
Amino-acid biosynthesis
;
Complete proteome
;
Direct protein sequencing
;
NAD
;
Oxidoreductase
;
Phosphoprotein
;
Reference proteome
;
Serine biosynthesis
.
Copyright
Copyrighted by the UniProt Consortium, see
https://www.uniprot.org/help/license
. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBL
X97772; CAA66374.1
; -; mRNA
EMBL
AJ271975; CAB89828.1
; -; Genomic_DNA
EMBL
BC086327; AAH86327.1
; -; mRNA
IPI
IPI00475835; -
; .
RefSeq
NP_113808.1; NM_031620.1
; .
UniGene
Rn.6872; -
; .
ProteinModelPortal
O08651; -
; .
SMR
O08651; 6-307
; .
IntAct
O08651; 1
; .
STRING
O08651; -
; .
World-2DPAGE
0004:O08651; -
; .
PRIDE
O08651; -
; .
Ensembl
ENSRNOT00000056173; ENSRNOP00000053019
; ENSRNOG00000019328; .
GeneID
58835; -
; .
KEGG
rno:58835; -
; .
NMPDR
fig|10116.3.peg.16688; -
; .
UCSC
BC086327; rat
; .
CTD
26227; -
; .
RGD
61987; Phgdh
; .
eggNOG
roNOG06496; -
; .
GeneTree
ENSGT00530000063021; -
; .
HOVERGEN
HBG054241; -
; .
InParanoid
O08651; -
; .
OMA
TGVFDGY; -
; .
OrthoDB
EOG4Q2DF9; -
; .
PhylomeDB
O08651; -
; .
BioCyc
MetaCyc:MONOMER-10261; -
; .
NextBio
611397; -
; .
ArrayExpress
O08651; -
; .
Genevestigator
O08651; -
; .
GermOnline
ENSRNOG00000019328; Rattus norvegicus
; .
GO
GO:0051287; F:NAD binding
; IEA:InterPro; .
GO
GO:0004617; F:phosphoglycerate dehydrogenase activity
; IDA:RGD; .
GO
GO:0006564; P:L-serine biosynthetic process
; IEA:UniProtKB-KW; .
InterPro
IPR006236; D-3-Phosphoglycerate_DH
; .
InterPro
IPR006139; D-isomer_2_OHA_DH_cat_dom
; .
InterPro
IPR006140; D-isomer_2_OHA_DH_NAD-bd
; .
InterPro
IPR016040; NAD(P)-bd_dom
; .
Gene3D
G3DSA:3.40.50.720; NAD(P)-bd
; 2; .
KO
K00058; -
; .
PANTHER
PTHR10996:SF20; D3PG_Deh
; 1; .
Pfam
PF00389; 2-Hacid_dh
; 1; .
Pfam
PF02826; 2-Hacid_dh_C
; 1; .
TIGRFAMs
TIGR01327; PGDH
; 1; .
PROSITE
PS00065; D_2_HYDROXYACID_DH_1
; 1; .
PROSITE
PS00670; D_2_HYDROXYACID_DH_2
; 1; .
PROSITE
PS00671; D_2_HYDROXYACID_DH_3
; 1; .
World-2DPAGE Repository (search AC)
Database constructed and maintained by
SIB
, using the
Make2D-DB II
package (
ver. 3.10.2
) from the
World-2DPAGE Constellation
of the
Expasy web server