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SWISS-2DPAGE

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SWISS-2DPAGE 
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Sample Preparation and Post-separation Analysis



Searching in 'SWISS-2DPAGE' for entry matching: DDX47_HUMAN




SWISS-2DPAGE:  DDX47_HUMAN


DDX47_HUMAN


General information about the entry
View entry in simple text format
Entry nameDDX47_HUMAN
Primary accession numberQ9H0S4
integrated into SWISS-2DPAGE on May 15, 2003 (release 16)
2D Annotations were last modified onDecember 30, 2004 (version 1)
General Annotations were last modified on May 19, 2011 (version 6)
Name and origin of the protein
DescriptionRecName: Full=Probable ATP-dependent RNA helicase DDX47; EC=3.6.4.13; AltName: Full=DEAD box protein 47;.
Gene nameName=DDX47
Annotated speciesHomo sapiens (Human) [TaxID: 9606]
TaxonomyEukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo.
References
[1]   MAPPING ON GEL
PubMed=12429849; [NCBI, Expasy, EBI, Israel, Japan]
Scherl A., Coute Y., Deon C., Calle A., Kindbeiter K., Sanchez J.-C., Greco A., Hochstrasser D.F., Diaz J.-J.
''''''Functional proteomic analysis of human nucleolus'';'';''
Mol. Biol. Cell. 13(1):4100-4109(2002)
2D PAGE maps for identified proteins
How to interpret a protein

NUCLEOLI_HELA_1D_HUMAN {SDS-PAGE of nucleolar proteins from Human HeLa cells}
Homo sapiens (Human)
Tissue: Cervix carcinoma
NUCLEOLI_HELA_1D_HUMAN
  map experimental info
  protein estimated location
 
NUCLEOLI_HELA_1D_HUMAN

MAP LOCATIONS:
Mw=51716  [identification data]
Mw=50927  [identification data]

MAPPING (identification):
Tandem mass spectrometry [1].

Copyright
This SWISS-2DPAGE entry is copyright the Swiss Institute of Bioinformatics. There are no restrictions on its use by non-profit institutions as long as its content is in no way modified and this statement is not removed. Usage by and for commercial entities requires a license agreement (See http://world-2dpage.expasy.org/swiss-2dpage/docs/license.html or send email from legal@sib.swiss).
Cross-references
UniProtKB/Swiss-ProtQ9H0S4; DDX47_HUMAN.
2D PAGE maps for identified proteins
  • How to interpret a protein map
  • You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
  • Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
  • Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed.



External data extracted from UniProtKB/Swiss-Prot
Extracted from UniProtKB/Swiss-Prot, release: 2011_10
Entry nameDDX47_HUMAN
Primary accession numberQ9H0S4
Secondary accession number(s) B3KXP4 Q96GM0 Q96NV8
Sequence was last modified on March 1, 2001 (version 1)
Annotations were last modified on October 19, 2011 (version 96)
Name and origin of the protein
DescriptionRecName: Full=Probable ATP-dependent RNA helicase DDX47; EC=3.6.4.13; AltName: Full=DEAD box protein 47;
Gene nameName=DDX47
Encoded onName=DDX47
Keywords3D-structure; Acetylation; ATP-binding; Complete proteome; Direct protein sequencing; Helicase; Hydrolase; Nucleotide-binding; Nucleus; Phosphoprotein; Reference proteome; RNA-binding.
Copyright
Copyrighted by the UniProt Consortium, see https://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBLAL136666; CAB66601.1; -; mRNA
EMBLAK054574; BAB70762.1; -; mRNA
EMBLAK127712; BAG54556.1; -; mRNA
EMBLCH471094; EAW96277.1; -; Genomic_DNA
EMBLBC009379; AAH09379.2; -; mRNA
EMBLBC068009; AAH68009.1; -; mRNA
IPIIPI00023972; -; .
RefSeqNP_057439.2; NM_016355.3; .
RefSeqNP_957518.1; NM_201224.1; .
UniGeneHs.719938; -; .
PDB3BER; X-ray; 1.40 A; A=5-230
PDBsum3BER; -; .
ProteinModelPortalQ9H0S4; -; .
SMRQ9H0S4; 11-389; .
IntActQ9H0S4; 5; .
MINTMINT-3056694; -; .
STRINGQ9H0S4; -; .
PhosphoSiteQ9H0S4; -; .
SWISS-2DPAGEQ9H0S4; -; .
PRIDEQ9H0S4; -; .
EnsemblENST00000358007; ENSP00000350698; ENSG00000213782; .
GeneID51202; -; .
KEGGhsa:51202; -; .
UCSCuc001rav.1; human; .
CTD51202; -; .
GeneCardsGC12P012771; -; .
HGNCHGNC:18682; DDX47; .
HPAHPA014855; -; .
neXtProtNX_Q9H0S4; -; .
PharmGKBPA134918403; -; .
HOGENOMHBG737336; -; .
HOVERGENHBG100512; -; .
InParanoidQ9H0S4; -; .
OMASNKYQTV; -; .
PhylomeDBQ9H0S4; -; .
NextBio54238; -; .
ArrayExpressQ9H0S4; -; .
BgeeQ9H0S4; -; .
CleanExHS_DDX47; -; .
GenevestigatorQ9H0S4; -; .
GermOnlineENSG00000178878; Homo sapiens; .
GOGO:0005730; C:nucleolus; IDA:HPA; .
GOGO:0005524; F:ATP binding; IEA:UniProtKB-KW; .
GOGO:0008026; F:ATP-dependent helicase activity; IEA:InterPro; .
GOGO:0005515; F:protein binding; IPI:UniProtKB; .
GOGO:0003723; F:RNA binding; IEA:UniProtKB-KW; .
InterProIPR014001; DEAD-like_helicase; .
InterProIPR011545; DNA/RNA_helicase_DEAD/DEAH_N; .
InterProIPR001650; Helicase_C; .
InterProIPR000629; RNA-helicase_DEAD-box_CS; .
InterProIPR014014; RNA_helicase_DEAD_Q_motif; .
PfamPF00270; DEAD; 1; .
PfamPF00271; Helicase_C; 1; .
SMARTSM00487; DEXDc; 1; .
SMARTSM00490; HELICc; 1; .
PROSITEPS00039; DEAD_ATP_HELICASE; 1; .
PROSITEPS51192; HELICASE_ATP_BIND_1; 1; .
PROSITEPS51194; HELICASE_CTER; 1; .
PROSITEPS51195; Q_MOTIF; 1; .



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Database constructed and maintained by SIB, using the Make2D-DB II package (ver. 3.10.2) from the World-2DPAGE Constellation of the Expasy web server