General information about the entry |
View entry in simple text format |
Entry name | DEAD_ECOLI |
Primary accession number | P0A9P6 |
Secondary accession number(s) | P23304 |
integrated into SWISS-2DPAGE on | May 15, 2003 (release 16) |
2D Annotations were last modified on | March 31, 2004 (version 1) |
General Annotations were last modified on | May 19, 2011 (version 9) |
Name and origin of the protein |
Description | RecName: Full=Cold-shock DEAD box protein A; EC=3.6.4.13; AltName: Full=ATP-dependent RNA helicase deaD; AltName: Full=Translation factor W2;. |
Gene name | Name=deaD Synonyms=csdA, mssB, rhlD OrderedLocusNames=b3162, JW5531
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Annotated species | Escherichia coli [TaxID: 562] |
Taxonomy | Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia. |
References |
[1] |
MAPPING ON GEL PubMed=12469338; [NCBI, Expasy, EBI, Israel, Japan]
Yan J.X., Devenish A.T., Wait R., Stone T., Lewis S., Fowler S. ''''''Fluorescence 2-D difference gel electrophoresis and mass spectrometry based proteomic analysis of E. coli'';'';'' Proteomics 2(1):1682-1698(2002)
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2D PAGE maps for identified proteins
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How to interpret a protein
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ECOLI-DIGE4.5-6.5 {Escherichia coli DIGE (4.5-6.5)} Escherichia coli
map experimental info protein estimated location
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ECOLI-DIGE4.5-6.5
MAP LOCATIONS:
EXPRESSION: decrease after benzoic acid treatment [1].
MAPPING (identification): Tandem mass spectrometry [1].
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Copyright |
This SWISS-2DPAGE entry is copyright the Swiss Institute of Bioinformatics. There are no restrictions on its use by non-profit institutions as long as its content is in no way modified and this statement is not removed. Usage by and for commercial entities requires a license agreement (See http://world-2dpage.expasy.org/swiss-2dpage/docs/license.html or send email from legal@sib.swiss). |
Cross-references |
UniProtKB/Swiss-Prot | P0A9P6; DEAD_ECOLI. |
2D PAGE maps for identified proteins
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- How to interpret a protein map
- You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
- Warning 1: the displayed region reflects
an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information.
It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
- Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed.
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External data extracted from UniProtKB/Swiss-Prot |
Extracted from UniProtKB/Swiss-Prot, release: 2011_10 |
Entry name | DEAD_ECOLI |
Primary accession number | P0A9P6 |
Secondary accession number(s) | P23304 Q2M948 Q8FD90 |
Sequence was last modified on | January 23, 2007 (version 2) |
Annotations were last modified on | October 19, 2011 (version 63) |
Name and origin of the protein |
Description | RecName: Full=Cold-shock DEAD box protein A; EC=3.6.4.13; AltName: Full=ATP-dependent RNA helicase deaD; AltName: Full=Translation factor W2; |
Gene name | Name=deaD Synonyms=csdA, mssB, rhlD OrderedLocusNames=b3162, JW5531 |
Encoded on | Name=deaD; Synonyms=csdA, mssB, rhlD; OrderedLocusNames=b3162, JW5531 |
Keywords | Activator; ATP-binding; Complete proteome; Cytoplasm; Direct protein sequencing; Helicase; Hydrolase; Nucleotide-binding; Reference proteome; RNA-binding; Stress response. |
Copyright |
Copyrighted by the UniProt Consortium, see https://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License |
Cross-references |
EMBL | M63288; AAA23674.1; ALT_SEQ; Genomic_DNA |
EMBL | U18997; AAA57965.1; ALT_INIT; Genomic_DNA |
EMBL | U00096; AAC76196.2; -; Genomic_DNA |
EMBL | AP009048; BAE77208.1; -; Genomic_DNA |
EMBL | U03750; AAA03626.1; -; Genomic_DNA |
PIR | F65106; F65106; . |
RefSeq | NP_417631.2; NC_000913.2; . |
ProteinModelPortal | P0A9P6; -; . |
SMR | P0A9P6; 5-410; 488-560; . |
DIP | DIP-35752N; -; . |
IntAct | P0A9P6; 84; . |
MINT | MINT-1219396; -; . |
SWISS-2DPAGE | P0A9P6; -; . |
EnsemblBacteria | EBESCT00000000679; EBESCP00000000679; EBESCG00000000569; . |
EnsemblBacteria | EBESCT00000014242; EBESCP00000013533; EBESCG00000013304; . |
GeneID | 947674; -; . |
GenomeReviews | AP009048_GR; JW5531; . |
GenomeReviews | U00096_GR; b3162; . |
KEGG | ecj:JW5531; -; . |
KEGG | eco:b3162; -; . |
EchoBASE | EB0211; -; . |
EcoGene | EG10215; deaD; . |
eggNOG | COG0513; -; . |
GeneTree | EBGT00050000008320; -; . |
HOGENOM | HBG737336; -; . |
OMA | ILFMTPR; -; . |
ProtClustDB | PRK11634; -; . |
BioCyc | EcoCyc:EG10215-MONOMER; -; . |
Genevestigator | P0A9P6; -; . |
GO | GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell; . |
GO | GO:0005524; F:ATP binding; IEA:UniProtKB-KW; . |
GO | GO:0004004; F:ATP-dependent RNA helicase activity; IDA:EcoCyc; . |
GO | GO:0003723; F:RNA binding; IEA:UniProtKB-KW; . |
GO | GO:0070417; P:cellular response to cold; IEP:EcoCyc; . |
GO | GO:0000027; P:ribosomal large subunit assembly; IMP:EcoCyc; . |
InterPro | IPR021046; Cold-shock_DEAD_Abox_C; . |
InterPro | IPR005580; DbpA_RNA-bd; . |
InterPro | IPR014001; DEAD-like_helicase; . |
InterPro | IPR011545; DNA/RNA_helicase_DEAD/DEAH_N; . |
InterPro | IPR001650; Helicase_C; . |
InterPro | IPR000629; RNA-helicase_DEAD-box_CS; . |
InterPro | IPR014014; RNA_helicase_DEAD_Q_motif; . |
Pfam | PF03880; DbpA; 1; . |
Pfam | PF00270; DEAD; 1; . |
Pfam | PF12343; DEADboxA; 1; . |
Pfam | PF00271; Helicase_C; 1; . |
SMART | SM00487; DEXDc; 1; . |
SMART | SM00490; HELICc; 1; . |
PROSITE | PS00039; DEAD_ATP_HELICASE; 1; . |
PROSITE | PS51192; HELICASE_ATP_BIND_1; 1; . |
PROSITE | PS51194; HELICASE_CTER; 1; . |
PROSITE | PS51195; Q_MOTIF; 1; . |