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Sample Preparation and Post-separation Analysis
Searching in 'SWISS-2DPAGE' for entry matching: OMPF_ECOLI |
SWISS-2DPAGE: OMPF_ECOLI
OMPF_ECOLI:
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ID OMPF_ECOLI; STANDARD; 2DG.
AC P02931;
DT 01-AUG-1995, integrated into SWISS-2DPAGE (release 2).
DT 15-MAY-2003, 2D annotation version 2.
DT 19-MAY-2011, general annotation version 11.
DE RecName: Full=Outer membrane protein F; AltName: Full=Outer membrane
DE protein 1A; AltName: Full=Outer membrane protein B; AltName: Full=Outer
DE membrane protein IA; AltName: Full=Porin OmpF; Flags: Precursor;.
GN Name=ompF; Synonyms=cmlB, coa, cry, tolF; OrderedLocusNames=b0929, JW0912;
OS Escherichia coli.
OC Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
OC Enterobacteriaceae; Escherichia.
OX NCBI_TaxID=562;
MT ECOLI, ECOLI-DIGE4.5-6.5.
IM ECOLI, ECOLI-DIGE4.5-6.5.
RN [1]
RP MAPPING ON GEL.
RX MEDLINE=96314059; PubMed=8740179; [NCBI, Expasy, EBI, Israel, Japan]
RA Pasquali C., Frutiger S., Wilkins M.R., Hughes G.J., Appel R.D., Bairoch
RA A., Schaller D., Sanchez J.-C., Hochstrasser D.F.;
RT ''''''Two-dimensional gel electrophoresis of Escherichia coli
RT homogenates: the Escherichia coli SWISS-2DPAGE database'';'';'';
RL Electrophoresis 17(1):547-555(1996).
RN [2]
RP MAPPING ON GEL.
RA Vanbogelen R.A., Abshire K.Z., Pertsemlidis A., Clark R.L., Neidhardt F.C.;
RT ''''''Gene-protein database of Escherichia coli K-12, edition 6'';'';'';
RL (IN) Neidhardt et al. (eds.);
RL Escherichia coli and Salmonella: Cellular and Molecular Biology (2nd
RL ed.), pp.2067-2117, ASM Press, Washington DC (1996).
RN [3]
RP MAPPING ON GEL.
RX PubMed=12469338; [NCBI, Expasy, EBI, Israel, Japan]
RA Yan J.X., Devenish A.T., Wait R., Stone T., Lewis S., Fowler S.;
RT ''''''Fluorescence 2-D difference gel electrophoresis and mass
RT spectrometry based proteomic analysis of E. coli'';'';'';
RL Proteomics 2(1):1682-1698(2002).
CC -!- SUBUNIT: HOMOTRIMER
2D -!- MASTER: ECOLI;
2D -!- PI/MW: SPOT 2D-000L58=4.60/36242;
2D -!- MAPPING: GEL MATCHING [1] AND IDENTIFIED ON 2-D GELS BY VANBOGELEN [2].
2D -!- MASTER: ECOLI-DIGE4.5-6.5;
2D -!- PI/MW: SPOT 2D-001WNW=4.56/37316;
2D -!- PI/MW: SPOT 2D-001WNX=4.64/37000;
2D -!- PI/MW: SPOT 2D-001WO6=4.71/37000;
2D -!- PEPTIDE SEQUENCES: SPOT 2D-001WNW:
2D (R)LAFAGLKYADVGSFDYGR(N),105-122; (R)NSNFFGLVDGLNFAVQYLGK(N),163-182;
2D (R)NSNFFGLVDGLNFAVQYLGKNER(D),163-185; (K)YDANNIYLAANYGETR(N),242-257.
2D -!- PEPTIDE SEQUENCES: SPOT 2D-001WNX: (K)YADVGSFDYGR(N),112-122;
2D (R)NSNFFGLVDGLNFAVQYLGK(N),163-182;
2D (R)RSNGDGVGGSISYEYEGFGIVGAYGAADR(T),190-218; (R)TNLQEAQPLGNGK(K),219-231;
2D (K)YDANNIYLAANYGETR(N),242-257; (K)FTNTSGFANK(T),266-275; (K)NMSTYVDYIINQIDSDNK(L),328-345.
2D -!- PEPTIDE SEQUENCES: SPOT 2D-001WO6: (K)YADVGSFDYGR(N),112-122; (R)NSNFFGLVDGLNFAVQYLGK(N),163-182.
2D -!- EXPRESSION: decrease after benzoic acid treatment [3].
2D -!- MAPPING: Tandem mass spectrometry [3].
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DR 2DBase-Ecoli; P02931; OMPF_ECOLI.
DR ECO2DBASE; B036.0; 6TH EDITION.
DR UniProtKB/Swiss-Prot; P02931; OMPF_ECOLI.
//
The following 2-D maps are available for this protein:
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Escherichia coli
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Escherichia coli DIGE (4.5-6.5)
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SWISS-2DPAGE (search AC)
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