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SWISS-2DPAGE 
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Sample Preparation and Post-separation Analysis



Searching in 'SWISS-2DPAGE' for entry matching: P00448




SWISS-2DPAGE:  P00448


P00448


General information about the entry
View entry in simple text format
Entry nameSODM_ECOLI
Primary accession numberP00448
integrated into SWISS-2DPAGE on August 1, 1995 (release 2)
2D Annotations were last modified onMay 15, 2003 (version 1)
General Annotations were last modified on May 19, 2011 (version 13)
Name and origin of the protein
DescriptionRecName: Full=Superoxide dismutase [Mn]; EC=1.15.1.1; AltName: Full=MnSOD;.
Gene nameName=sodA
OrderedLocusNames=b3908, JW3879
Annotated speciesEscherichia coli [TaxID: 562]
TaxonomyBacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.
References
[1]   MAPPING ON GEL
MEDLINE=96314059; PubMed=8740179; [NCBI, ExPASy, EBI, Israel, Japan]
Pasquali C., Frutiger S., Wilkins M.R., Hughes G.J., Appel R.D., Bairoch A., Schaller D., Sanchez J.-C., Hochstrasser D.F.
''''''Two-dimensional gel electrophoresis of Escherichia coli homogenates: the Escherichia coli SWISS-2DPAGE database'';'';''
Electrophoresis 17(1):547-555(1996)
[2]   MAPPING ON GEL
Vanbogelen R.A., Abshire K.Z., Pertsemlidis A., Clark R.L., Neidhardt F.C.
''''''Gene-protein database of Escherichia coli K-12, edition 6'';'';''
(IN) Neidhardt et al. (eds.)Escherichia coli and Salmonella: Cellular and Molecular Biology (2nd ed.), pp.2067-2117, ASM Press, Washington DC (1996)
[3]   MAPPING ON GEL
MEDLINE=80159887; PubMed=6988414; [NCBI, ExPASy, EBI, Israel, Japan]
Bloch P.L., Phillips T.A., Neidhardt F.C.
''''''Protein identifications of O'Farrell two-dimensional gels: locations of 81 Escherichia coli proteins'';'';''
J. Bacteriol. 141(1):1409-1420(1980)
[4]   PROTEIN EXPRESSION
MEDLINE=83160794; PubMed=6339477; [NCBI, ExPASy, EBI, Israel, Japan]
Smith M.W., Neidhardt F.C.
''''''Proteins induced by aerobiosis in Escherichia coli'';'';''
J. Bacteriol. 154(1):344-350(1983)
Comments
  • SUBUNIT: HOMODIMER
2D PAGE maps for identified proteins
How to interpret a protein

ECOLI {Escherichia coli}
Escherichia coli
ECOLI
  map experimental info
  protein estimated location
 
ECOLI

MAP LOCATIONS:
pI=6.44; Mw=22966

EXPRESSION:
INCREASED DURING AEROBIC GROWTH [4].

MAPPING (identification):
AMINO ACID COMPOSITION AND MICROSEQUENCE ANALYSIS [1] AND IDENTIFIED ON 2-D GELS BY VANBOGELEN [2] AND BLOCH [3].

Copyright
This SWISS-2DPAGE entry is copyright the Swiss Institute of Bioinformatics. There are no restrictions on its use by non-profit institutions as long as its content is in no way modified and this statement is not removed. Usage by and for commercial entities requires a license agreement (See http://world-2dpage.expasy.org/swiss-2dpage/docs/license.html or send email from legal@sib.swiss).
Cross-references
ECO2DBASEI021.3; 6TH EDITION.
UniProtKB/Swiss-ProtP00448; SODM_ECOLI.
2D PAGE maps for identified proteins
  • How to interpret a protein map
  • You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
  • Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
  • Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed.



External data extracted from UniProtKB/Swiss-Prot
Extracted from UniProtKB/Swiss-Prot, release: 2011_10
Entry nameSODM_ECOLI
Primary accession numberP00448
Secondary accession number(s) Q2M8K5
Sequence was last modified on January 23, 2007 (version 2)
Annotations were last modified on October 19, 2011 (version 127)
Name and origin of the protein
DescriptionRecName: Full=Superoxide dismutase [Mn]; EC=1.15.1.1; AltName: Full=MnSOD;
Gene nameName=sodA
OrderedLocusNames=b3908, JW3879
Encoded onName=sodA; OrderedLocusNames=b3908, JW3879
Keywords3D-structure; Complete proteome; Direct protein sequencing; Manganese; Metal-binding; Oxidoreductase; Reference proteome.
Copyright
Copyrighted by the UniProt Consortium, see https://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBLX03951; CAA27580.1; -; Genomic_DNA
EMBLM20984; -; NOT_ANNOTATED_CDS; Genomic_DNA
EMBLL19201; AAB03041.1; -; Genomic_DNA
EMBLU00096; AAC76890.1; -; Genomic_DNA
EMBLAP009048; BAE77401.1; -; Genomic_DNA
EMBLX60699; CAA43108.1; -; Genomic_DNA
EMBLM85158; AAA24528.1; ALT_SEQ; Genomic_DNA
PIRA24141; DSECN; .
RefSeqNP_418344.3; NC_000913.2; .
PDB1D5N; X-ray; 1.55 A; A/B/C/D=2-206
PDB1EN4; X-ray; 2.00 A; A/B/C/D=2-206
PDB1EN5; X-ray; 2.30 A; A/B/C/D=2-206
PDB1EN6; X-ray; 2.00 A; A/B/C/D=2-206
PDB1I08; X-ray; 2.20 A; A/B/C/D=2-206
PDB1I0H; X-ray; 1.35 A; A/B=2-206
PDB1IX9; X-ray; 0.90 A; A/B=2-206
PDB1IXB; X-ray; 0.90 A; A/B=2-206
PDB1MMM; X-ray; 2.20 A; A/B=2-206
PDB1VEW; X-ray; 2.10 A; A/B/C/D=2-206
PDB1ZLZ; X-ray; 1.55 A; A/B=2-206
PDB3K9S; X-ray; 1.55 A; A/B/C/D=2-206
PDB3OT7; X-ray; 1.90 A; A/B/C/D=2-206
PDBsum1D5N; -; .
PDBsum1EN4; -; .
PDBsum1EN5; -; .
PDBsum1EN6; -; .
PDBsum1I08; -; .
PDBsum1I0H; -; .
PDBsum1IX9; -; .
PDBsum1IXB; -; .
PDBsum1MMM; -; .
PDBsum1VEW; -; .
PDBsum1ZLZ; -; .
PDBsum3K9S; -; .
PDBsum3OT7; -; .
ProteinModelPortalP00448; -; .
SMRP00448; 2-206; .
IntActP00448; 7; .
SWISS-2DPAGEP00448; -; .
ECO2DBASEI021.3; 6TH EDITION; .
EnsemblBacteriaEBESCT00000003662; EBESCP00000003662; EBESCG00000002993; .
EnsemblBacteriaEBESCT00000016073; EBESCP00000015364; EBESCG00000015133; .
GeneID948403; -; .
GenomeReviewsAP009048_GR; JW3879; .
GenomeReviewsU00096_GR; b3908; .
KEGGecj:JW3879; -; .
KEGGeco:b3908; -; .
EchoBASEEB0946; -; .
EcoGeneEG10953; sodA; .
eggNOGCOG0605; -; .
GeneTreeEBGT00050000009596; -; .
HOGENOMHBG507761; -; .
OMAWPVEKLV; -; .
ProtClustDBPRK10925; -; .
BioCycEcoCyc:SUPEROX-DISMUTMN-MONOMER; -; .
BioCycMetaCyc:SUPEROX-DISMUTMN-MONOMER; -; .
GenevestigatorP00448; -; .
GOGO:0005737; C:cytoplasm; IDA:EcoliWiki; .
GOGO:0003677; F:DNA binding; IDA:EcoCyc; .
GOGO:0030145; F:manganese ion binding; IDA:EcoCyc; .
GOGO:0004784; F:superoxide dismutase activity; IDA:EcoCyc; .
GOGO:0071291; P:cellular response to selenium ion; IEP:EcoCyc; .
GOGO:0019430; P:removal of superoxide radicals; IDA:EcoliWiki; .
GOGO:0010447; P:response to acidity; IMP:EcoCyc; .
GOGO:0009408; P:response to heat; IMP:EcoCyc; .
InterProIPR001189; Mn/Fe_SOD; .
InterProIPR019833; Mn/Fe_SOD_BS; .
InterProIPR019832; Mn/Fe_SOD_C; .
InterProIPR019831; Mn/Fe_SOD_N; .
PANTHERPTHR11404; SODismutase; 1; .
PfamPF02777; Sod_Fe_C; 1; .
PfamPF00081; Sod_Fe_N; 1; .
PIRSFPIRSF000349; SODismutase; 1; .
PRINTSPR01703; MNSODISMTASE; .
SUPFAMSSF46609; SODismutase; 1; .
SUPFAMSSF54719; SODismutase; 1; .
PROSITEPS00088; SOD_MN; 1; .



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Database constructed and maintained by SIB, using the Make2D-DB II package (ver. 3.10.2) from the World-2DPAGE Constellation of the ExPASy web server