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SWISS-2DPAGE 
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Sample Preparation and Post-separation Analysis



Searching in 'SWISS-2DPAGE' for entry matching: P05090




SWISS-2DPAGE:  P05090


P05090


General information about the entry
View entry in simple text format
Entry nameAPOD_HUMAN
Primary accession numberP05090
integrated into SWISS-2DPAGE on August 1, 1993 (release 0)
2D Annotations were last modified onMay 15, 2003 (version 1)
General Annotations were last modified on May 19, 2011 (version 15)
Name and origin of the protein
DescriptionRecName: Full=Apolipoprotein D; Short=Apo-D; Short=ApoD; Flags: Precursor;.
Gene nameName=APOD
Annotated speciesHomo sapiens (Human) [TaxID: 9606]
TaxonomyEukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo.
References
[1]   MAPPING ON GEL
MEDLINE=78094420; PubMed=271964; [NCBI, ExPASy, EBI, Israel, Japan]
Anderson N.L., Anderson N.G.
''''''High resolution two-dimensional electrophoresis of human plasma proteins'';'';''
Proc. Natl. Acad. Sci. U.S.A. 74(1):5421-5425(1977)
[2]   MAPPING ON GEL
MEDLINE=96007934; PubMed=7498157; [NCBI, ExPASy, EBI, Israel, Japan]
Sanchez J.-C., Appel R.D., Golaz O.G., Pasquali C., Ravier F., Bairoch A., Hochstrasser D.F.
''''''Inside SWISS-2DPAGE database'';'';''
Electrophoresis 16(1):1131-1151(1995)
Comments
  • SUBUNIT: HOMODIMER
2D PAGE maps for identified proteins
How to interpret a protein

CSF_HUMAN {Cerebrospinal Fluid}
Homo sapiens (Human)
Tissue: Cerebrospinal fluid
CSF_HUMAN
  map experimental info
  protein estimated location
 
CSF_HUMAN

MAP LOCATIONS:
pI=4.22; Mw=30928
pI=4.21; Mw=30097
pI=4.37; Mw=29801
pI=4.23; Mw=29144
pI=4.31; Mw=29072
pI=4.37; Mw=29000
pI=4.46; Mw=28714
pI=4.55; Mw=28714
pI=4.38; Mw=27943
pI=4.46; Mw=27736
pI=4.55; Mw=27259
pI=4.67; Mw=26990
pI=4.79; Mw=26071
pI=4.80; Mw=24566

MAPPING (identification):
MATCHING WITH THE PLASMA MASTER GEL [2].



PLASMA_HUMAN {Plasma}
Homo sapiens (Human)
Tissue: Plasma
PLASMA_HUMAN
  map experimental info
  protein estimated location
 
PLASMA_HUMAN

MAP LOCATIONS:
pI=4.44; Mw=32256
pI=4.50; Mw=31224
pI=4.78; Mw=30225
pI=4.55; Mw=30126
pI=4.51; Mw=29931
pI=4.61; Mw=29257
pI=4.55; Mw=29162
pI=4.68; Mw=28599
pI=4.61; Mw=28506
pI=4.77; Mw=28046
pI=4.77; Mw=27061
pI=4.88; Mw=27061

NORMAL LEVEL:
80-100 MG/L.

PATHOLOGICAL LEVEL:
INCREASED DURING TYPE I HYPERLIPAEMIA.

MAPPING (identification):
IMMUNOBLOTTING [1].

Copyright
This SWISS-2DPAGE entry is copyright the Swiss Institute of Bioinformatics. There are no restrictions on its use by non-profit institutions as long as its content is in no way modified and this statement is not removed. Usage by and for commercial entities requires a license agreement (See http://world-2dpage.expasy.org/swiss-2dpage/docs/license.html or send email from legal@sib.swiss).
Cross-references
UniProtKB/Swiss-ProtP05090; APOD_HUMAN.
2D PAGE maps for identified proteins
  • How to interpret a protein map
  • You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
  • Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
  • Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed.



External data extracted from UniProtKB/Swiss-Prot
Extracted from UniProtKB/Swiss-Prot, release: 2011_10
Entry nameAPOD_HUMAN
Primary accession numberP05090
Secondary accession number(s) B2R579 D3DNW6 Q6IBG6
Sequence was last modified on August 13, 1987 (version 1)
Annotations were last modified on October 19, 2011 (version 138)
Name and origin of the protein
DescriptionRecName: Full=Apolipoprotein D; Short=Apo-D; Short=ApoD; Flags: Precursor;
Gene nameName=APOD
Encoded onName=APOD
Keywords3D-structure; Complete proteome; Direct protein sequencing; Disulfide bond; Glycoprotein; Lipid-binding; Polymorphism; Pyrrolidone carboxylic acid; Reference proteome; Secreted; Signal; Transport.
Copyright
Copyrighted by the UniProt Consortium, see https://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBLJ02611; AAB59517.1; -; mRNA
EMBLM16696; AAA51764.1; -; Genomic_DNA
EMBLBT019860; AAV38663.1; -; mRNA
EMBLBT019861; AAV38664.1; -; mRNA
EMBLCR456838; CAG33119.1; -; mRNA
EMBLCR541773; CAG46572.1; -; mRNA
EMBLAK312090; BAG35026.1; -; mRNA
EMBLCH471052; EAW78023.1; -; Genomic_DNA
EMBLCH471052; EAW78024.1; -; Genomic_DNA
EMBLBC007402; AAH07402.1; -; mRNA
EMBLS80440; AAB35919.1; -; mRNA
IPIIPI00006662; -; .
PIRA26958; LPHUD; .
RefSeqNP_001638.1; NM_001647.3; .
UniGeneHs.522555; -; .
PDB2APD; Model; -; A=21-189
PDB2HZQ; X-ray; 1.80 A; A=23-189
PDB2HZR; X-ray; 1.80 A; A=23-189
PDBsum2APD; -; .
PDBsum2HZQ; -; .
PDBsum2HZR; -; .
ProteinModelPortalP05090; -; .
SMRP05090; 23-188; .
IntActP05090; 2; .
MINTMINT-1396020; -; .
STRINGP05090; -; .
SWISS-2DPAGEP05090; -; .
PeptideAtlasP05090; -; .
PRIDEP05090; -; .
EnsemblENST00000343267; ENSP00000345179; ENSG00000189058; .
GeneID347; -; .
KEGGhsa:347; -; .
UCSCuc003fur.1; human; .
CTD347; -; .
GeneCardsGC03M192666; -; .
H-InvDBHIX0003987; -; .
HGNCHGNC:612; APOD; .
MIM107740; gene; .
neXtProtNX_P05090; -; .
PharmGKBPA24900; -; .
eggNOGprNOG04250; -; .
GeneTreeENSGT00510000046981; -; .
HOVERGENHBG018734; -; .
InParanoidP05090; -; .
OrthoDBEOG4G7C0M; -; .
PhylomeDBP05090; -; .
NextBio1431; -; .
ArrayExpressP05090; -; .
BgeeP05090; -; .
CleanExHS_APOD; -; .
GenevestigatorP05090; -; .
GermOnlineENSG00000189058; Homo sapiens; .
GOGO:0005615; C:extracellular space; IDA:BHF-UCL; .
GOGO:0008289; F:lipid binding; IEA:UniProtKB-KW; .
GOGO:0005319; F:lipid transporter activity; TAS:ProtInc; .
GOGO:0005515; F:protein binding; IPI:UniProtKB; .
GOGO:0006629; P:lipid metabolic process; TAS:ProtInc; .
InterProIPR002969; ApolipopD; .
InterProIPR012674; Calycin; .
InterProIPR011038; Calycin-like; .
InterProIPR002345; Lipocalin; .
InterProIPR022271; Lipocalin_ApoD; .
InterProIPR022272; Lipocalin_CS; .
InterProIPR000566; Lipocln_cytosolic_FA-bd_dom; .
Gene3DG3DSA:2.40.128.20; Calycin; 1; .
PfamPF00061; Lipocalin; 1; .
PIRSFPIRSF036893; Lipocalin_ApoD; 1; .
PRINTSPR01219; APOLIPOPROTD; .
PRINTSPR00179; LIPOCALIN; .
SUPFAMSSF50814; Calycin; 1; .
PROSITEPS00213; LIPOCALIN; 1; .



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SWISS-2DPAGE (search AC)


Database constructed and maintained by SIB, using the Make2D-DB II package (ver. 3.10.2) from the World-2DPAGE Constellation of the ExPASy web server