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SWISS-2DPAGE 
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Sample Preparation and Post-separation Analysis



Searching in 'SWISS-2DPAGE' for entry matching: P08244




SWISS-2DPAGE:  P08244


P08244


General information about the entry
View entry in simple text format
Entry namePYRF_ECOLI
Primary accession numberP08244
integrated into SWISS-2DPAGE on August 1, 1995 (release 2)
2D Annotations were last modified onMay 15, 2003 (version 2)
General Annotations were last modified on May 19, 2011 (version 12)
Name and origin of the protein
DescriptionRecName: Full=Orotidine 5'-phosphate decarboxylase; EC=4.1.1.23; AltName: Full=OMP decarboxylase; Short=OMPDCase; Short=OMPdecase;.
Gene nameName=pyrF
OrderedLocusNames=b1281, JW1273
Annotated speciesEscherichia coli [TaxID: 562]
TaxonomyBacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.
References
[1]   MAPPING ON GEL
MEDLINE=96314059; PubMed=8740179; [NCBI, ExPASy, EBI, Israel, Japan]
Pasquali C., Frutiger S., Wilkins M.R., Hughes G.J., Appel R.D., Bairoch A., Schaller D., Sanchez J.-C., Hochstrasser D.F.
''''''Two-dimensional gel electrophoresis of Escherichia coli homogenates: the Escherichia coli SWISS-2DPAGE database'';'';''
Electrophoresis 17(1):547-555(1996)
[2]   MAPPING ON GEL
Vanbogelen R.A., Abshire K.Z., Pertsemlidis A., Clark R.L., Neidhardt F.C.
''''''Gene-protein database of Escherichia coli K-12, edition 6'';'';''
(IN) Neidhardt et al. (eds.)Escherichia coli and Salmonella: Cellular and Molecular Biology (2nd ed.), pp.2067-2117, ASM Press, Washington DC (1996)
[3]   MAPPING ON GEL
PubMed=12469338; [NCBI, ExPASy, EBI, Israel, Japan]
Yan J.X., Devenish A.T., Wait R., Stone T., Lewis S., Fowler S.
''''''Fluorescence 2-D difference gel electrophoresis and mass spectrometry based proteomic analysis of E. coli'';'';''
Proteomics 2(1):1682-1698(2002)
Comments
  • SUBUNIT: HOMODIMER
2D PAGE maps for identified proteins
How to interpret a protein

ECOLI {Escherichia coli}
Escherichia coli
ECOLI
  map experimental info
  protein estimated location
 
ECOLI

MAP LOCATIONS:
pI=5.76; Mw=56743

MAPPING (identification):
GEL MATCHING [1] AND IDENTIFIED ON 2-D GELS BY VANBOGELEN [2].



ECOLI-DIGE4.5-6.5 {Escherichia coli DIGE (4.5-6.5)}
Escherichia coli
ECOLI-DIGE4.5-6.5
  map experimental info
  protein estimated location
 
ECOLI-DIGE4.5-6.5

MAP LOCATIONS:
pI=5.83; Mw=24964  [identification data]

MAPPING (identification):
Tandem mass spectrometry [3].

Copyright
This SWISS-2DPAGE entry is copyright the Swiss Institute of Bioinformatics. There are no restrictions on its use by non-profit institutions as long as its content is in no way modified and this statement is not removed. Usage by and for commercial entities requires a license agreement (See http://world-2dpage.expasy.org/swiss-2dpage/docs/license.html or send email from legal@sib.swiss).
Cross-references
UniProtKB/Swiss-ProtP08244; PYRF_ECOLI.
2D PAGE maps for identified proteins
  • How to interpret a protein map
  • You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
  • Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
  • Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed.



External data extracted from UniProtKB/Swiss-Prot
Extracted from UniProtKB/Swiss-Prot, release: 2011_10
Entry namePYRF_ECOLI
Primary accession numberP08244
Sequence was last modified on August 1, 1988 (version 1)
Annotations were last modified on October 19, 2011 (version 107)
Name and origin of the protein
DescriptionRecName: Full=Orotidine 5'-phosphate decarboxylase; EC=4.1.1.23; AltName: Full=OMP decarboxylase; Short=OMPDCase; Short=OMPdecase;
Gene nameName=pyrF
OrderedLocusNames=b1281, JW1273
Encoded onName=pyrF; OrderedLocusNames=b1281, JW1273
Keywords3D-structure; Complete proteome; Decarboxylase; Lyase; Pyrimidine biosynthesis; Reference proteome.
Copyright
Copyrighted by the UniProt Consortium, see https://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBLJ02768; AAA24483.1; -; Genomic_DNA
EMBLU00096; AAC74363.1; -; Genomic_DNA
EMBLAP009048; BAA14835.1; -; Genomic_DNA
EMBLM23250; -; NOT_ANNOTATED_CDS; Genomic_DNA
PIRA28440; DCECOP; .
RefSeqNP_415797.1; NC_000913.2; .
PDB1EIX; X-ray; 2.50 A; A/B/C/D=1-245
PDB1JJK; X-ray; 3.00 A; A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P=1-245
PDB1L2U; X-ray; 2.50 A; A/B=1-245
PDBsum1EIX; -; .
PDBsum1JJK; -; .
PDBsum1L2U; -; .
ProteinModelPortalP08244; -; .
SMRP08244; 12-243; .
IntActP08244; 3; .
SWISS-2DPAGEP08244; -; .
EnsemblBacteriaEBESCT00000003964; EBESCP00000003964; EBESCG00000003249; .
EnsemblBacteriaEBESCT00000016469; EBESCP00000015760; EBESCG00000015529; .
GeneID947121; -; .
GenomeReviewsAP009048_GR; JW1273; .
GenomeReviewsU00096_GR; b1281; .
KEGGecj:JW1273; -; .
KEGGeco:b1281; -; .
EchoBASEEB0802; -; .
EcoGeneEG10809; pyrF; .
eggNOGCOG0284; -; .
GeneTreeEBGT00050000011841; -; .
HOGENOMHBG625253; -; .
OMATVHAYPQ; -; .
ProtClustDBPRK00230; -; .
BioCycEcoCyc:OROTPDECARB-MONOMER; -; .
BioCycMetaCyc:OROTPDECARB-MONOMER; -; .
GenevestigatorP08244; -; .
GOGO:0005737; C:cytoplasm; IDA:EcoliWiki; .
GOGO:0004590; F:orotidine-5'-phosphate decarboxylase activity; IDA:EcoCyc; .
GOGO:0005515; F:protein binding; IPI:IntAct; .
GOGO:0006207; P:'de novo' pyrimidine base biosynthetic process; IMP:EcoCyc; .
GOGO:0044205; P:'de novo' UMP biosynthetic process; IEA:InterPro; .
GOGO:0015949; P:nucleobase-containing small molecule interconversion; IDA:EcoliWiki; .
HAMAPMF_01200_B; OMPdecase_type1_B; 1; -
InterProIPR013785; Aldolase_TIM; .
InterProIPR014732; OMPdecase; .
InterProIPR018089; OMPdecase_AS; .
InterProIPR001754; OMPdeCOase_dom; .
InterProIPR011060; RibuloseP-bd_barrel; .
Gene3DG3DSA:3.20.20.70; Aldolase_TIM; 1; .
PfamPF00215; OMPdecase; 1; .
SMARTSM00934; OMPdecase; 1; .
SUPFAMSSF51366; RibP_bind_barrel; 1; .
TIGRFAMsTIGR01740; PyrF; 1; .
PROSITEPS00156; OMPDECASE; 1; .



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Database constructed and maintained by SIB, using the Make2D-DB II package (ver. 3.10.2) from the World-2DPAGE Constellation of the ExPASy web server