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SWISS-2DPAGE 
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Sample Preparation and Post-separation Analysis



Searching in 'SWISS-2DPAGE' for entry matching: Q8TDD1




SWISS-2DPAGE:  Q8TDD1


Q8TDD1


General information about the entry
View entry in simple text format
Entry nameDDX54_HUMAN
Primary accession numberQ8TDD1
Secondary accession number(s) Q9BRZ1
integrated into SWISS-2DPAGE on May 15, 2003 (release 16)
2D Annotations were last modified onDecember 30, 2004 (version 1)
General Annotations were last modified on May 19, 2011 (version 8)
Name and origin of the protein
DescriptionRecName: Full=ATP-dependent RNA helicase DDX54; EC=3.6.4.13; AltName: Full=ATP-dependent RNA helicase DP97; AltName: Full=DEAD box RNA helicase 97 kDa; AltName: Full=DEAD box protein 54;.
Gene nameName=DDX54
Annotated speciesHomo sapiens (Human) [TaxID: 9606]
TaxonomyEukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo.
References
[1]   MAPPING ON GEL
PubMed=12429849; [NCBI, ExPASy, EBI, Israel, Japan]
Scherl A., Coute Y., Deon C., Calle A., Kindbeiter K., Sanchez J.-C., Greco A., Hochstrasser D.F., Diaz J.-J.
''''''Functional proteomic analysis of human nucleolus'';'';''
Mol. Biol. Cell. 13(1):4100-4109(2002)
2D PAGE maps for identified proteins
How to interpret a protein

NUCLEOLI_HELA_1D_HUMAN {SDS-PAGE of nucleolar proteins from Human HeLa cells}
Homo sapiens (Human)
Tissue: Cervix carcinoma
NUCLEOLI_HELA_1D_HUMAN
  map experimental info
  protein estimated location
 
NUCLEOLI_HELA_1D_HUMAN

MAP LOCATIONS:
Mw=96301  [identification data]

MAPPING (identification):
Tandem mass spectrometry [1].

Copyright
This SWISS-2DPAGE entry is copyright the Swiss Institute of Bioinformatics. There are no restrictions on its use by non-profit institutions as long as its content is in no way modified and this statement is not removed. Usage by and for commercial entities requires a license agreement (See http://world-2dpage.expasy.org/swiss-2dpage/docs/license.html or send email from legal@sib.swiss).
Cross-references
UniProtKB/Swiss-ProtQ8TDD1; DDX54_HUMAN.
2D PAGE maps for identified proteins
  • How to interpret a protein map
  • You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
  • Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
  • Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed.



External data extracted from UniProtKB/Swiss-Prot
Extracted from UniProtKB/Swiss-Prot, release: 2011_10
Entry nameDDX54_HUMAN
Primary accession numberQ8TDD1
Secondary accession number(s) Q86YT8 Q9BRZ1
Sequence was last modified on April 26, 2004 (version 2)
Annotations were last modified on September 21, 2011 (version 91)
Name and origin of the protein
DescriptionRecName: Full=ATP-dependent RNA helicase DDX54; EC=3.6.4.13; AltName: Full=ATP-dependent RNA helicase DP97; AltName: Full=DEAD box RNA helicase 97 kDa; AltName: Full=DEAD box protein 54;
Gene nameName=DDX54
Encoded onName=DDX54
KeywordsAcetylation; Alternative splicing; ATP-binding; Complete proteome; Helicase; Hydrolase; Nucleotide-binding; Nucleus; Phosphoprotein; Polymorphism; Reference proteome; RNA-binding; Transcription; Transcription regulation.
Copyright
Copyrighted by the UniProt Consortium, see https://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBLAF478457; AAL85336.1; -; mRNA
EMBLAC089999; -; NOT_ANNOTATED_CDS; Genomic_DNA
EMBLAY148094; AAN59978.1; ALT_SEQ; mRNA
EMBLBC005848; AAH05848.2; -; mRNA
IPIIPI00152510; -; .
IPIIPI00879999; -; .
RefSeqNP_001104792.1; NM_001111322.1; .
RefSeqNP_076977.3; NM_024072.3; .
UniGeneHs.506861; -; .
ProteinModelPortalQ8TDD1; -; .
SMRQ8TDD1; 92-460; .
IntActQ8TDD1; 1; .
STRINGQ8TDD1; -; .
PhosphoSiteQ8TDD1; -; .
SWISS-2DPAGEQ8TDD1; -; .
PRIDEQ8TDD1; -; .
EnsemblENST00000306014; ENSP00000304072; ENSG00000123064; .
GeneID79039; -; .
KEGGhsa:79039; -; .
UCSCuc001tup.1; human; .
CTD79039; -; .
GeneCardsGC12M110607; -; .
HGNCHGNC:20084; DDX54; .
HPAHPA028244; -; .
MIM611665; gene; .
neXtProtNX_Q8TDD1; -; .
eggNOGprNOG06005; -; .
GeneTreeENSGT00550000075100; -; .
HOVERGENHBG051333; -; .
InParanoidQ8TDD1; -; .
OMAFYIPYRP; -; .
PhylomeDBQ8TDD1; -; .
NextBio67773; -; .
ArrayExpressQ8TDD1; -; .
BgeeQ8TDD1; -; .
CleanExHS_DDX54; -; .
GenevestigatorQ8TDD1; -; .
GermOnlineENSG00000123064; Homo sapiens; .
GOGO:0005730; C:nucleolus; IDA:UniProtKB; .
GOGO:0005524; F:ATP binding; IEA:UniProtKB-KW; .
GOGO:0004004; F:ATP-dependent RNA helicase activity; IDA:UniProtKB; .
GOGO:0030331; F:estrogen receptor binding; IDA:UniProtKB; .
GOGO:0003723; F:RNA binding; IEA:UniProtKB-KW; .
GOGO:0003714; F:transcription corepressor activity; IDA:UniProtKB; .
GOGO:0030520; P:estrogen receptor signaling pathway; TAS:UniProtKB; .
GOGO:0006355; P:regulation of transcription; DNA-dependent; IEA:UniProtKB-KW
GOGO:0006396; P:RNA processing; IDA:UniProtKB; .
GOGO:0006351; P:transcription; DNA-dependent; IEA:UniProtKB-KW
InterProIPR012541; DBP10CT; .
InterProIPR014001; DEAD-like_helicase; .
InterProIPR011545; DNA/RNA_helicase_DEAD/DEAH_N; .
InterProIPR001650; Helicase_C; .
InterProIPR000629; RNA-helicase_DEAD-box_CS; .
InterProIPR014014; RNA_helicase_DEAD_Q_motif; .
PfamPF08147; DBP10CT; 1; .
PfamPF00270; DEAD; 1; .
PfamPF00271; Helicase_C; 1; .
ProDomPD024971; DBP10CT; 1; .
SMARTSM00487; DEXDc; 1; .
SMARTSM00490; HELICc; 1; .
PROSITEPS00039; DEAD_ATP_HELICASE; 1; .
PROSITEPS51192; HELICASE_ATP_BIND_1; 1; .
PROSITEPS51194; HELICASE_CTER; 1; .
PROSITEPS51195; Q_MOTIF; 1; .



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Database constructed and maintained by SIB, using the Make2D-DB II package (ver. 3.10.2) from the World-2DPAGE Constellation of the ExPASy web server