World-2DPAGE Home
Home  |  Contact

Attention: World-2DPAGE is no longer maintained. Previously submitted data can still be queried at World-2DPAGE Repository.


SWISS-2DPAGE 
Search by  [accession number] *
[description, ID or gene] 
[author names] 
[spot ID / serial number] 
[identification methods] 
[pI / Mw range] 
[combined fields] 

Maps  [experimental info] 
[protein list] 
[graphical interface]

     Select Remote Interfaces
[All Interfaces]
World-2DPAGE Portal
World-2DPAGE Repository

Exclude local DBs
has only effect if a remote
interface is selected
     

Sample Preparation and Post-separation Analysis



Searching in 'SWISS-2DPAGE' for entry matching: Q9NY93




SWISS-2DPAGE:  Q9NY93


Q9NY93


General information about the entry
View entry in simple text format
Entry nameDDX56_HUMAN
Primary accession numberQ9NY93
integrated into SWISS-2DPAGE on May 15, 2003 (release 16)
2D Annotations were last modified onMarch 31, 2004 (version 1)
General Annotations were last modified on May 19, 2011 (version 7)
Name and origin of the protein
DescriptionRecName: Full=Probable ATP-dependent RNA helicase DDX56; EC=3.6.4.13; AltName: Full=ATP-dependent 61 kDa nucleolar RNA helicase; AltName: Full=DEAD box protein 21; AltName: Full=DEAD box protein 56;.
Gene nameName=DDX56
Synonyms=DDX21, NOH61
Annotated speciesHomo sapiens (Human) [TaxID: 9606]
TaxonomyEukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo.
References
[1]   MAPPING ON GEL
PubMed=12429849; [NCBI, ExPASy, EBI, Israel, Japan]
Scherl A., Coute Y., Deon C., Calle A., Kindbeiter K., Sanchez J.-C., Greco A., Hochstrasser D.F., Diaz J.-J.
''''''Functional proteomic analysis of human nucleolus'';'';''
Mol. Biol. Cell. 13(1):4100-4109(2002)
Comments
  • SUBUNIT: May form homo-oligomeric complexes
2D PAGE maps for identified proteins
How to interpret a protein

NUCLEOLI_HELA_1D_HUMAN {SDS-PAGE of nucleolar proteins from Human HeLa cells}
Homo sapiens (Human)
Tissue: Cervix carcinoma
NUCLEOLI_HELA_1D_HUMAN
  map experimental info
  protein estimated location
 
NUCLEOLI_HELA_1D_HUMAN

MAP LOCATIONS:
Mw=61882  [identification data]

MAPPING (identification):
Tandem mass spectrometry [1].

Copyright
This SWISS-2DPAGE entry is copyright the Swiss Institute of Bioinformatics. There are no restrictions on its use by non-profit institutions as long as its content is in no way modified and this statement is not removed. Usage by and for commercial entities requires a license agreement (See http://world-2dpage.expasy.org/swiss-2dpage/docs/license.html or send email from legal@sib.swiss).
Cross-references
UniProtKB/Swiss-ProtQ9NY93; DDX56_HUMAN.
2D PAGE maps for identified proteins
  • How to interpret a protein map
  • You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
  • Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
  • Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed.



External data extracted from UniProtKB/Swiss-Prot
Extracted from UniProtKB/Swiss-Prot, release: 2011_10
Entry nameDDX56_HUMAN
Primary accession numberQ9NY93
Secondary accession number(s) A4D2K9 Q6IAE2 Q9H9I8
Sequence was last modified on October 1, 2000 (version 1)
Annotations were last modified on October 19, 2011 (version 106)
Name and origin of the protein
DescriptionRecName: Full=Probable ATP-dependent RNA helicase DDX56; EC=3.6.4.13; AltName: Full=ATP-dependent 61 kDa nucleolar RNA helicase; AltName: Full=DEAD box protein 21; AltName: Full=DEAD box protein 56;
Gene nameName=DDX56
Synonyms=DDX21, NOH61
Encoded onName=DDX56; Synonyms=DDX21, NOH61
KeywordsAcetylation; ATP-binding; Complete proteome; Helicase; Hydrolase; Nucleotide-binding; Nucleus; Phosphoprotein; Reference proteome; Ribosome biogenesis; RNA-binding; rRNA processing.
Copyright
Copyrighted by the UniProt Consortium, see https://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBLAJ131712; CAB87992.1; -; mRNA
EMBLAF247666; AAG36876.1; -; mRNA
EMBLAL136700; CAB66635.1; -; mRNA
EMBLAK022774; BAB14238.1; -; mRNA
EMBLCR457213; CAG33494.1; -; mRNA
EMBLCH236960; EAL23752.1; -; Genomic_DNA
EMBLCH471128; EAW61094.1; -; Genomic_DNA
EMBLBC001235; AAH01235.1; -; mRNA
IPIIPI00302281; -; .
RefSeqNP_061955.1; NM_019082.2; .
UniGeneHs.654762; -; .
ProteinModelPortalQ9NY93; -; .
SMRQ9NY93; 1-393; .
IntActQ9NY93; 3; .
STRINGQ9NY93; -; .
PhosphoSiteQ9NY93; -; .
SWISS-2DPAGEQ9NY93; -; .
PRIDEQ9NY93; -; .
EnsemblENST00000258772; ENSP00000258772; ENSG00000136271; .
GeneID54606; -; .
KEGGhsa:54606; -; .
UCSCuc003tlg.1; human; .
CTD54606; -; .
GeneCardsGC07M044489; -; .
HGNCHGNC:18193; DDX56; .
HPAHPA019749; -; .
MIM608023; gene; .
neXtProtNX_Q9NY93; -; .
PharmGKBPA134916346; -; .
GeneTreeENSGT00550000074946; -; .
HOGENOMHBG559320; -; .
HOVERGENHBG051334; -; .
InParanoidQ9NY93; -; .
OMACVLNFDL; -; .
OrthoDBEOG47H5PT; -; .
PhylomeDBQ9NY93; -; .
NextBio57133; -; .
ArrayExpressQ9NY93; -; .
BgeeQ9NY93; -; .
CleanExHS_DDX21; -; .
CleanExHS_DDX56; -; .
GenevestigatorQ9NY93; -; .
GermOnlineENSG00000136271; Homo sapiens; .
GOGO:0005730; C:nucleolus; IDA:LIFEdb; .
GOGO:0005524; F:ATP binding; IEA:UniProtKB-KW; .
GOGO:0004004; F:ATP-dependent RNA helicase activity; TAS:ProtInc; .
GOGO:0003723; F:RNA binding; IEA:UniProtKB-KW; .
GOGO:0006364; P:rRNA processing; IEA:UniProtKB-KW; .
InterProIPR014001; DEAD-like_helicase; .
InterProIPR011545; DNA/RNA_helicase_DEAD/DEAH_N; .
InterProIPR001650; Helicase_C; .
InterProIPR014014; RNA_helicase_DEAD_Q_motif; .
PfamPF00270; DEAD; 1; .
PfamPF00271; Helicase_C; 2; .
SMARTSM00487; DEXDc; 1; .
SMARTSM00490; HELICc; 1; .
PROSITEPS51192; HELICASE_ATP_BIND_1; 1; .
PROSITEPS51194; HELICASE_CTER; 1; .
PROSITEPS51195; Q_MOTIF; 1; .



SWISS-2DPAGE image

SWISS-2DPAGE (search AC)


Database constructed and maintained by SIB, using the Make2D-DB II package (ver. 3.10.2) from the World-2DPAGE Constellation of the ExPASy web server