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Sample Preparation and Post-separation Analysis

Searching in 'SWISS-2DPAGE' for entry matching: YGFZ_ECOLI



General information about the entry
View entry in simple text format
Entry nameYGFZ_ECOLI
Primary accession numberP0ADE8
Secondary accession number(s) P39179
integrated into SWISS-2DPAGE on December 1, 2000 (release 13)
2D Annotations were last modified onMay 15, 2003 (version 1)
General Annotations were last modified on May 19, 2011 (version 9)
Name and origin of the protein
DescriptionRecName: Full=tRNA-modifying protein ygfZ;.
Gene nameName=ygfZ
OrderedLocusNames=b2898, JW2866
Annotated speciesEscherichia coli [TaxID: 562]
TaxonomyBacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.
PubMed=11680886; [NCBI, Expasy, EBI, Israel, Japan]
Tonella L., Hoogland C., Binz P.-A., Appel R.D., Hochstrasser D.F., Sanchez J.-C.
''''''New perspectives in the Escherichia coli proteome investigation'';'';''
Proteomics 1(1):409-423(2001)
2D PAGE maps for identified proteins
How to interpret a protein

ECOLI6-11 {Escherichia coli(6-11)}
Escherichia coli
  map experimental info
  protein estimated location

pI=6.11; Mw=34907  [identification data]

MAPPING (identification):
Peptide mass fingerprinting [1].

This SWISS-2DPAGE entry is copyright the Swiss Institute of Bioinformatics. There are no restrictions on its use by non-profit institutions as long as its content is in no way modified and this statement is not removed. Usage by and for commercial entities requires a license agreement (See or send email from
UniProtKB/Swiss-ProtP0ADE8; YGFZ_ECOLI.
2D PAGE maps for identified proteins
  • How to interpret a protein map
  • You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
  • Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
  • Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed.

External data extracted from UniProtKB/Swiss-Prot
Extracted from UniProtKB/Swiss-Prot, release: 2011_10
Entry nameYGFZ_ECOLI
Primary accession numberP0ADE8
Secondary accession number(s) P39179 Q2M9U3 Q46826
Sequence was last modified on January 23, 2007 (version 2)
Annotations were last modified on October 19, 2011 (version 55)
Name and origin of the protein
DescriptionRecName: Full=tRNA-modifying protein ygfZ;
Gene nameName=ygfZ
OrderedLocusNames=b2898, JW2866
Encoded onName=ygfZ; Synonyms=yzzW; OrderedLocusNames=b2898, JW2866
Keywords3D-structure; Complete proteome; Cytoplasm; Direct protein sequencing; Folate-binding; Reference proteome; tRNA processing.
Copyrighted by the UniProt Consortium, see Distributed under the Creative Commons Attribution-NoDerivs License
EMBLU28375; AAA83079.1; -; Genomic_DNA
EMBLU00096; AAC75936.1; -; Genomic_DNA
EMBLAP009048; BAE76963.1; -; Genomic_DNA
PIRB65074; B65074; .
RefSeqNP_417374.1; NC_000913.2; .
PDB1NRK; X-ray; 2.80 A; A=1-325
PDB1VLY; X-ray; 1.30 A; A=1-326
PDBsum1NRK; -; .
PDBsum1VLY; -; .
ProteinModelPortalP0ADE8; -; .
SMRP0ADE8; 1-325; .
DIPDIP-48117N; -; .
IntActP0ADE8; 6; .
MINTMINT-1257340; -; .
EnsemblBacteriaEBESCT00000004601; EBESCP00000004601; EBESCG00000003750; .
EnsemblBacteriaEBESCT00000017059; EBESCP00000016350; EBESCG00000016118; .
GeneID947384; -; .
GenomeReviewsAP009048_GR; JW2866; .
GenomeReviewsU00096_GR; b2898; .
KEGGecj:JW2866; -; .
KEGGeco:b2898; -; .
EchoBASEEB2549; -; .
EcoGeneEG12685; ygfZ; .
eggNOGCOG0354; -; .
GeneTreeEBGT00050000008933; -; .
HOGENOMHBG700628; -; .
ProtClustDBPRK09559; -; .
BioCycEcoCyc:G7511-MONOMER; -; .
GenevestigatorP0ADE8; -; .
GOGO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell; .
GOGO:0004047; F:aminomethyltransferase activity; IEA:InterPro; .
GOGO:0005542; F:folic acid binding; IDA:EcoCyc; .
GOGO:0006546; P:glycine catabolic process; IEA:InterPro; .
GOGO:0009451; P:RNA modification; IEA:InterPro; .
GOGO:0008033; P:tRNA processing; IEA:UniProtKB-KW; .
HAMAPMF_01175; tRNA-modifying_YgfZ; 1; -
InterProIPR006222; GCV_T_N; .
InterProIPR023758; tRNA-modifying_YgfZ; .
InterProIPR017703; YgfZ/GcvT_CS; .
PfamPF01571; GCV_T; 1; .
TIGRFAMsTIGR03317; YgfZ_signature; 1; .


SWISS-2DPAGE (search AC)

Database constructed and maintained by SIB, using the Make2D-DB II package (ver. 3.10.2) from the World-2DPAGE Constellation of the Expasy web server