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SWISS-2DPAGE 
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Sample Preparation and Post-separation Analysis



Searching in 'SWISS-2DPAGE' for entry matching: P0A7R1




SWISS-2DPAGE:  P0A7R1


P0A7R1


General information about the entry
View entry in simple text format
Entry nameRL9_ECOLI
Primary accession numberP0A7R1
Secondary accession number(s) P02418
integrated into SWISS-2DPAGE on August 1, 1995 (release 2)
2D Annotations were last modified onMarch 31, 2004 (version 4)
General Annotations were last modified on May 19, 2011 (version 14)
Name and origin of the protein
DescriptionRecName: Full=50S ribosomal protein L9;.
Gene nameName=rplI
OrderedLocusNames=b4203, JW4161
Annotated speciesEscherichia coli [TaxID: 562]
TaxonomyBacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.
References
[1]   MAPPING ON GEL
MEDLINE=96314059; PubMed=8740179; [NCBI, ExPASy, EBI, Israel, Japan]
Pasquali C., Frutiger S., Wilkins M.R., Hughes G.J., Appel R.D., Bairoch A., Schaller D., Sanchez J.-C., Hochstrasser D.F.
''''''Two-dimensional gel electrophoresis of Escherichia coli homogenates: the Escherichia coli SWISS-2DPAGE database'';'';''
Electrophoresis 17(1):547-555(1996)
[2]   MAPPING ON GEL
Vanbogelen R.A., Abshire K.Z., Pertsemlidis A., Clark R.L., Neidhardt F.C.
''''''Gene-protein database of Escherichia coli K-12, edition 6'';'';''
(IN) Neidhardt et al. (eds.)Escherichia coli and Salmonella: Cellular and Molecular Biology (2nd ed.), pp.2067-2117, ASM Press, Washington DC (1996)
[3]   MAPPING ON GEL
MEDLINE=80159887; PubMed=6988414; [NCBI, ExPASy, EBI, Israel, Japan]
Bloch P.L., Phillips T.A., Neidhardt F.C.
''''''Protein identifications of O'Farrell two-dimensional gels: locations of 81 Escherichia coli proteins'';'';''
J. Bacteriol. 141(1):1409-1420(1980)
[4]   MAPPING ON GEL
MEDLINE=98410772; PubMed=9740056; [NCBI, ExPASy, EBI, Israel, Japan]
Tonella L., Walsh B.J., Sanchez J.-C., Ou K., Wilkins M.R., Tyler M., Frutiger S., Gooley A.A., Pescaru I., Appel R.D., Yan J.X., Bairoch A., Hoogland C., Morch F.S., Hughes G.J., Williams K.L., Hochstrasser D.F.
'''''''98 Escherichia coli SWISS-2DPAGE database update'';'';''
Electrophoresis 19(1):1960-1971(1998)
[5]   MAPPING ON GEL
PubMed=11680886; [NCBI, ExPASy, EBI, Israel, Japan]
Tonella L., Hoogland C., Binz P.-A., Appel R.D., Hochstrasser D.F., Sanchez J.-C.
''''''New perspectives in the Escherichia coli proteome investigation'';'';''
Proteomics 1(1):409-423(2001)
2D PAGE maps for identified proteins
How to interpret a protein

ECOLI {Escherichia coli}
Escherichia coli
ECOLI
  map experimental info
  protein estimated location
 
ECOLI

MAP LOCATIONS:
pI=6.20; Mw=19832  [identification data]
pI=6.17; Mw=15769  [identification data]

MAPPING (identification):
SPOT 2D-000LM4: MICROSEQUENCING [4];
SPOT 2D-000LQE: AMINO ACID COMPOSITION AND MICROSEQUENCE ANALYSIS [1], IDENTIFIED ON 2-D GELS BY VANBOGELEN [2] AND BLOCH [3].



ECOLI4.5-5.5 {Escherichia coli(4.5-5.5)}
Escherichia coli
ECOLI4.5-5.5
  map experimental info
  protein estimated location
 
ECOLI4.5-5.5

MAP LOCATIONS:
pI=5.10; Mw=8919  [identification data]

MAPPING (identification):
Peptide mass fingerprinting [5].



ECOLI6-11 {Escherichia coli(6-11)}
Escherichia coli
ECOLI6-11
  map experimental info
  protein estimated location
 
ECOLI6-11

MAP LOCATIONS:
pI=6.36; Mw=15124  [identification data]

MAPPING (identification):
Peptide mass fingerprinting [5].

Copyright
This SWISS-2DPAGE entry is copyright the Swiss Institute of Bioinformatics. There are no restrictions on its use by non-profit institutions as long as its content is in no way modified and this statement is not removed. Usage by and for commercial entities requires a license agreement (See http://world-2dpage.expasy.org/swiss-2dpage/docs/license.html or send email from legal@sib.swiss).
Cross-references
ECO2DBASEH014.0; 6TH EDITION.
UniProtKB/Swiss-ProtP0A7R1; RL9_ECOLI.
2D PAGE maps for identified proteins
  • How to interpret a protein map
  • You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
  • Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
  • Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed.



External data extracted from UniProtKB/Swiss-Prot
Extracted from UniProtKB/Swiss-Prot, release: 2011_10
Entry nameRL9_ECOLI
Primary accession numberP0A7R1
Secondary accession number(s) P02418 Q2M6A2
Sequence was last modified on April 1, 1988 (version 1)
Annotations were last modified on October 19, 2011 (version 73)
Name and origin of the protein
DescriptionRecName: Full=50S ribosomal protein L9;
Gene nameName=rplI
OrderedLocusNames=b4203, JW4161
Encoded onName=rplI; OrderedLocusNames=b4203, JW4161
Keywords3D-structure; Acetylation; Complete proteome; Direct protein sequencing; Reference proteome; Ribonucleoprotein; Ribosomal protein; RNA-binding; rRNA-binding.
Copyright
Copyrighted by the UniProt Consortium, see https://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBLX04022; CAA27655.1; -; Genomic_DNA
EMBLU14003; AAA97099.1; -; Genomic_DNA
EMBLU00096; AAC77160.1; -; Genomic_DNA
EMBLAP009048; BAE78204.1; -; Genomic_DNA
PIRF65231; R5EC9; .
RefSeqNP_418624.1; NC_000913.2; .
PDB1P85; EM; 12.30 A; F=1-149
PDB1P86; EM; 11.50 A; F=1-149
PDB1VS6; X-ray; 3.46 A; H=1-149
PDB1VS8; X-ray; 3.46 A; H=1-149
PDB1VT2; X-ray; 3.30 A; H=1-149
PDB2AW4; X-ray; 3.46 A; H=1-149
PDB2AWB; X-ray; 3.46 A; H=1-149
PDB2GYA; EM; 15.00 A; F=1-149
PDB2GYC; EM; 15.00 A; F=1-149
PDB2I2T; X-ray; 3.22 A; H=1-149
PDB2I2V; X-ray; 3.22 A; H=1-149
PDB2J28; EM; 8.00 A; H=1-149
PDB2QAM; X-ray; 3.21 A; H=1-149
PDB2QAO; X-ray; 3.21 A; H=1-149
PDB2QBA; X-ray; 3.54 A; H=1-149
PDB2QBC; X-ray; 3.54 A; H=1-149
PDB2QBE; X-ray; 3.30 A; H=1-149
PDB2QBG; X-ray; 3.30 A; H=1-149
PDB2QBI; X-ray; 4.00 A; H=1-149
PDB2QBK; X-ray; 4.00 A; H=1-149
PDB2QOV; X-ray; 3.93 A; H=1-149
PDB2QOX; X-ray; 3.93 A; H=1-149
PDB2QOZ; X-ray; 3.50 A; H=1-149
PDB2QP1; X-ray; 3.50 A; H=1-149
PDB2RDO; EM; 9.10 A; H=1-149
PDB2VHM; X-ray; 3.74 A; H=1-149
PDB2VHN; X-ray; 3.74 A; H=1-149
PDB2WWQ; EM; 5.80 A; H=1-149
PDB2Z4L; X-ray; 4.45 A; H=1-149
PDB2Z4N; X-ray; 4.45 A; H=1-149
PDB3BBX; EM; 10.00 A; H=1-149
PDB3DF2; X-ray; 3.50 A; H=1-149
PDB3DF4; X-ray; 3.50 A; H=1-149
PDB3E1B; EM; -; 4=1-149
PDB3E1D; EM; -; 4=1-149
PDB3FIK; EM; 6.70 A; H=1-149
PDB3I1N; X-ray; 3.19 A; H=1-149
PDB3I1P; X-ray; 3.19 A; H=1-149
PDB3I1R; X-ray; 3.81 A; H=1-149
PDB3I1T; X-ray; 3.81 A; H=1-149
PDB3I20; X-ray; 3.71 A; H=1-149
PDB3I22; X-ray; 3.71 A; H=1-149
PDB3IZT; EM; -; I=1-149
PDB3IZU; EM; -; I=1-149
PDB3J01; EM; -; H=1-149
PDB3KCR; EM; -; H=1-149
PDB3OAS; X-ray; 3.25 A; H=1-149
PDB3OAT; X-ray; 3.25 A; H=1-149
PDB3OFC; X-ray; 3.19 A; H=1-149
PDB3OFD; X-ray; 3.19 A; H=1-149
PDB3OFQ; X-ray; 3.10 A; H=1-149
PDB3OFR; X-ray; 3.10 A; H=1-149
PDB3OFZ; X-ray; 3.29 A; H=1-149
PDB3OG0; X-ray; 3.29 A; H=1-149
PDB3ORB; X-ray; 3.30 A; H=1-149
PDB3R8S; X-ray; 3.00 A; H=1-149
PDB3R8T; X-ray; 3.00 A; H=1-149
PDB487D; EM; 7.50 A; K=24-123
PDBsum1P85; -; .
PDBsum1P86; -; .
PDBsum1VS6; -; .
PDBsum1VS8; -; .
PDBsum1VT2; -; .
PDBsum2AW4; -; .
PDBsum2AWB; -; .
PDBsum2GYA; -; .
PDBsum2GYC; -; .
PDBsum2I2T; -; .
PDBsum2I2V; -; .
PDBsum2J28; -; .
PDBsum2QAM; -; .
PDBsum2QAO; -; .
PDBsum2QBA; -; .
PDBsum2QBC; -; .
PDBsum2QBE; -; .
PDBsum2QBG; -; .
PDBsum2QBI; -; .
PDBsum2QBK; -; .
PDBsum2QOV; -; .
PDBsum2QOX; -; .
PDBsum2QOZ; -; .
PDBsum2QP1; -; .
PDBsum2RDO; -; .
PDBsum2VHM; -; .
PDBsum2VHN; -; .
PDBsum2WWQ; -; .
PDBsum2Z4L; -; .
PDBsum2Z4N; -; .
PDBsum3BBX; -; .
PDBsum3DF2; -; .
PDBsum3DF4; -; .
PDBsum3E1B; -; .
PDBsum3E1D; -; .
PDBsum3FIK; -; .
PDBsum3I1N; -; .
PDBsum3I1P; -; .
PDBsum3I1R; -; .
PDBsum3I1T; -; .
PDBsum3I20; -; .
PDBsum3I22; -; .
PDBsum3IZT; -; .
PDBsum3IZU; -; .
PDBsum3J01; -; .
PDBsum3KCR; -; .
PDBsum3OAS; -; .
PDBsum3OAT; -; .
PDBsum3OFC; -; .
PDBsum3OFD; -; .
PDBsum3OFQ; -; .
PDBsum3OFR; -; .
PDBsum3OFZ; -; .
PDBsum3OG0; -; .
PDBsum3ORB; -; .
PDBsum3R8S; -; .
PDBsum3R8T; -; .
PDBsum487D; -; .
ProteinModelPortalP0A7R1; -; .
SMRP0A7R1; 1-149; .
DIPDIP-35748N; -; .
IntActP0A7R1; 59; .
MINTMINT-1228834; -; .
SWISS-2DPAGEP0A7R1; -; .
ECO2DBASEH014.0; 6TH EDITION; .
PRIDEP0A7R1; -; .
EnsemblBacteriaEBESCT00000000262; EBESCP00000000262; EBESCG00000000217; .
EnsemblBacteriaEBESCT00000014555; EBESCP00000013846; EBESCG00000013616; .
GeneID948720; -; .
GenomeReviewsAP009048_GR; JW4161; .
GenomeReviewsU00096_GR; b4203; .
KEGGecj:JW4161; -; .
KEGGeco:b4203; -; .
EchoBASEEB0863; -; .
EcoGeneEG10870; rplI; .
eggNOGCOG0359; -; .
GeneTreeEBGT00050000010749; -; .
HOGENOMHBG586587; -; .
OMASGKLFGT; -; .
ProtClustDBPRK00137; -; .
BioCycEcoCyc:EG10870-MONOMER; -; .
GenevestigatorP0A7R1; -; .
GOGO:0005840; C:ribosome; IEA:UniProtKB-KW; .
GOGO:0019843; F:rRNA binding; IEA:UniProtKB-KW; .
GOGO:0003735; F:structural constituent of ribosome; IEA:InterPro; .
GOGO:0006412; P:translation; IEA:InterPro; .
HAMAPMF_00503; Ribosomal_L9; 1; -
InterProIPR000244; Ribosomal_L9; .
InterProIPR009027; Ribosomal_L9/RNase_H1_N; .
InterProIPR020594; Ribosomal_L9_bac/chp; .
InterProIPR020069; Ribosomal_L9_C; .
InterProIPR020070; Ribosomal_L9_N; .
Gene3DG3DSA:3.10.430.100; Ribosomal_L9; 1; .
Gene3DG3DSA:3.40.5.10; Ribosomal_L9; 1; .
PANTHERPTHR21368; Ribosomal_L9; 1; .
PfamPF03948; Ribosomal_L9_C; 1; .
PfamPF01281; Ribosomal_L9_N; 1; .
SUPFAMSSF55658; L9_N_like; 1; .
SUPFAMSSF55653; Ribosomal_L9; 1; .
TIGRFAMsTIGR00158; L9; 1; .
PROSITEPS00651; RIBOSOMAL_L9; 1; .



SWISS-2DPAGE image

SWISS-2DPAGE (search AC)


Database constructed and maintained by SIB, using the Make2D-DB II package (ver. 3.10.2) from the World-2DPAGE Constellation of the ExPASy web server