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Sample Preparation and Post-separation Analysis



Searching in 'SWISS-2DPAGE' for entry matching: P0A903




SWISS-2DPAGE:  P0A903


P0A903


General information about the entry
View entry in simple text format
Entry nameNLPB_ECOLI
Primary accession numberP0A903
Secondary accession number(s) P21167
integrated into SWISS-2DPAGE on May 15, 2003 (release 16)
2D Annotations were last modified onMay 15, 2003 (version 1)
General Annotations were last modified on May 19, 2011 (version 6)
Name and origin of the protein
DescriptionRecName: Full=Lipoprotein 34; Flags: Precursor;.
Gene nameName=nlpB
Synonyms=dapX
OrderedLocusNames=b2477, JW2462
Annotated speciesEscherichia coli [TaxID: 562]
TaxonomyBacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.
References
[1]   MAPPING ON GEL
PubMed=12469338; [NCBI, ExPASy, EBI, Israel, Japan]
Yan J.X., Devenish A.T., Wait R., Stone T., Lewis S., Fowler S.
''''''Fluorescence 2-D difference gel electrophoresis and mass spectrometry based proteomic analysis of E. coli'';'';''
Proteomics 2(1):1682-1698(2002)
2D PAGE maps for identified proteins
How to interpret a protein

ECOLI-DIGE4.5-6.5 {Escherichia coli DIGE (4.5-6.5)}
Escherichia coli
ECOLI-DIGE4.5-6.5
  map experimental info
  protein estimated location
 
ECOLI-DIGE4.5-6.5

MAP LOCATIONS:
pI=4.88; Mw=35000  [identification data]

MAPPING (identification):
Tandem mass spectrometry [1].

Copyright
This SWISS-2DPAGE entry is copyright the Swiss Institute of Bioinformatics. There are no restrictions on its use by non-profit institutions as long as its content is in no way modified and this statement is not removed. Usage by and for commercial entities requires a license agreement (See http://world-2dpage.expasy.org/swiss-2dpage/docs/license.html or send email from legal@sib.swiss).
Cross-references
UniProtKB/Swiss-ProtP0A903; NLPB_ECOLI.
2D PAGE maps for identified proteins
  • How to interpret a protein map
  • You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
  • Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
  • Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed.



External data extracted from UniProtKB/Swiss-Prot
Extracted from UniProtKB/Swiss-Prot, release: 2011_10
Entry nameNLPB_ECOLI
Primary accession numberP0A903
Secondary accession number(s) P21167 P76564
Sequence was last modified on July 19, 2005 (version 1)
Annotations were last modified on October 19, 2011 (version 60)
Name and origin of the protein
DescriptionRecName: Full=Lipoprotein 34; Flags: Precursor;
Gene nameName=nlpB
Synonyms=dapX
OrderedLocusNames=b2477, JW2462
Encoded onName=nlpB; Synonyms=dapX; OrderedLocusNames=b2477, JW2462
Keywords3D-structure; Cell membrane; Cell outer membrane; Complete proteome; Lipoprotein; Membrane; Palmitate; Reference proteome; Signal.
Copyright
Copyrighted by the UniProt Consortium, see https://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBLX57402; CAA40661.1; -; Genomic_DNA
EMBLM33928; -; NOT_ANNOTATED_CDS; Genomic_DNA
EMBLU00096; AAC75530.2; -; Genomic_DNA
EMBLAP009048; BAA16354.1; -; Genomic_DNA
PIRD65023; D65023; .
RefSeqNP_416972.4; NC_000913.2; .
PDB2LAE; NMR; -; A=101-344
PDB2LAF; NMR; -; A=101-344
PDB2YH6; X-ray; 1.55 A; A/B/C/D=101-212
PDB3SNS; X-ray; 1.50 A; A=224-343
PDBsum2LAE; -; .
PDBsum2LAF; -; .
PDBsum2YH6; -; .
PDBsum3SNS; -; .
ProteinModelPortalP0A903; -; .
SMRP0A903; 101-212; 226-344; .
IntActP0A903; 6; .
TCDB1.B.33.1.3; outer membrane protein insertion porin (Bam Complex) (OmpIP) family; .
SWISS-2DPAGEP0A903; -; .
EnsemblBacteriaEBESCT00000000775; EBESCP00000000775; EBESCG00000000648; .
EnsemblBacteriaEBESCT00000000776; EBESCP00000000776; EBESCG00000000648; .
EnsemblBacteriaEBESCT00000015605; EBESCP00000014896; EBESCG00000014665; .
GeneID946954; -; .
GenomeReviewsAP009048_GR; JW2462; .
GenomeReviewsU00096_GR; b2477; .
KEGGecj:JW2462; -; .
KEGGeco:b2477; -; .
EchoBASEEB0652; -; .
EcoGeneEG10658; nlpB; .
eggNOGCOG3317; -; .
GeneTreeEBGT00050000010836; -; .
HOGENOMHBG391161; -; .
OMAEDKRRYT; -; .
ProtClustDBPRK11679; -; .
BioCycEcoCyc:EG10658-MONOMER; -; .
GenevestigatorP0A903; -; .
GOGO:0009279; C:cell outer membrane; IDA:EcoCyc; .
GOGO:0005886; C:plasma membrane; IEA:UniProtKB-KW; .
GOGO:0043165; P:Gram-negative-bacterium-type cell outer membrane assembly; IDA:EcoCyc; .
GOGO:0051205; P:protein insertion into membrane; IDA:EcoCyc; .
InterProIPR010653; Lipoprotein_NlpB; .
InterProIPR014524; Lipoprotein_NlpB_typ; .
PfamPF06804; Lipoprotein_18; 1; .
PIRSFPIRSF026343; NlpB; 1; .
PROSITEPS51257; PROKAR_LIPOPROTEIN; 1; .



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