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Sample Preparation and Post-separation Analysis



Searching in 'SWISS-2DPAGE' for entry matching: P0ABF6




SWISS-2DPAGE:  P0ABF6


P0ABF6


General information about the entry
View entry in simple text format
Entry nameCDD_ECOLI
Primary accession numberP0ABF6
Secondary accession number(s) P13652
integrated into SWISS-2DPAGE on May 15, 2003 (release 16)
2D Annotations were last modified onMay 15, 2003 (version 1)
General Annotations were last modified on May 19, 2011 (version 6)
Name and origin of the protein
DescriptionRecName: Full=Cytidine deaminase; EC=3.5.4.5; AltName: Full=Cytidine aminohydrolase; Short=CDA;.
Gene nameName=cdd
OrderedLocusNames=b2143, JW2131
Annotated speciesEscherichia coli [TaxID: 562]
TaxonomyBacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.
References
[1]   MAPPING ON GEL
PubMed=12469338; [NCBI, ExPASy, EBI, Israel, Japan]
Yan J.X., Devenish A.T., Wait R., Stone T., Lewis S., Fowler S.
''''''Fluorescence 2-D difference gel electrophoresis and mass spectrometry based proteomic analysis of E. coli'';'';''
Proteomics 2(1):1682-1698(2002)
Comments
  • SUBUNIT: HOMODIMER
2D PAGE maps for identified proteins
How to interpret a protein

ECOLI-DIGE4.5-6.5 {Escherichia coli DIGE (4.5-6.5)}
Escherichia coli
ECOLI-DIGE4.5-6.5
  map experimental info
  protein estimated location
 
ECOLI-DIGE4.5-6.5

MAP LOCATIONS:
pI=5.36; Mw=32716  [identification data]

MAPPING (identification):
Tandem mass spectrometry [1].

Copyright
This SWISS-2DPAGE entry is copyright the Swiss Institute of Bioinformatics. There are no restrictions on its use by non-profit institutions as long as its content is in no way modified and this statement is not removed. Usage by and for commercial entities requires a license agreement (See http://world-2dpage.expasy.org/swiss-2dpage/docs/license.html or send email from legal@sib.swiss).
Cross-references
UniProtKB/Swiss-ProtP0ABF6; CDD_ECOLI.
2D PAGE maps for identified proteins
  • How to interpret a protein map
  • You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
  • Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
  • Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed.



External data extracted from UniProtKB/Swiss-Prot
Extracted from UniProtKB/Swiss-Prot, release: 2011_10
Entry nameCDD_ECOLI
Primary accession numberP0ABF6
Secondary accession number(s) P13652 Q2MAT6
Sequence was last modified on October 25, 2005 (version 1)
Annotations were last modified on October 19, 2011 (version 56)
Name and origin of the protein
DescriptionRecName: Full=Cytidine deaminase; EC=3.5.4.5; AltName: Full=Cytidine aminohydrolase; Short=CDA;
Gene nameName=cdd
OrderedLocusNames=b2143, JW2131
Encoded onName=cdd; OrderedLocusNames=b2143, JW2131
Keywords3D-structure; Complete proteome; Direct protein sequencing; Hydrolase; Metal-binding; Reference proteome; Zinc.
Copyright
Copyrighted by the UniProt Consortium, see https://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBLM60916; AAA23542.1; -; Genomic_DNA
EMBLX63144; CAA44849.1; ALT_FRAME; Genomic_DNA
EMBLU00007; AAA60533.1; -; Genomic_DNA
EMBLU00096; AAC75204.1; -; Genomic_DNA
EMBLAP009048; BAE76620.1; -; Genomic_DNA
EMBLX16419; CAA34441.1; -; Genomic_DNA
EMBLZ47804; CAA87765.1; -; Genomic_DNA
PIRF64982; F64982; .
RefSeqNP_416648.1; NC_000913.2; .
PDB1AF2; X-ray; 2.30 A; A=1-294
PDB1ALN; X-ray; 2.30 A; A=1-294
PDB1CTT; X-ray; 2.20 A; A=1-294
PDB1CTU; X-ray; 2.30 A; A=1-294
PDBsum1AF2; -; .
PDBsum1ALN; -; .
PDBsum1CTT; -; .
PDBsum1CTU; -; .
ProteinModelPortalP0ABF6; -; .
SMRP0ABF6; 1-294; .
DIPDIP-36169N; -; .
IntActP0ABF6; 1; .
MINTMINT-1283574; -; .
SWISS-2DPAGEP0ABF6; -; .
PRIDEP0ABF6; -; .
EnsemblBacteriaEBESCT00000003860; EBESCP00000003860; EBESCG00000003155; .
EnsemblBacteriaEBESCT00000015250; EBESCP00000014541; EBESCG00000014310; .
GeneID946663; -; .
GenomeReviewsAP009048_GR; JW2131; .
GenomeReviewsU00096_GR; b2143; .
KEGGecj:JW2131; -; .
KEGGeco:b2143; -; .
EchoBASEEB0135; -; .
EcoGeneEG10137; cdd; .
eggNOGCOG0295; -; .
GeneTreeEBGT00050000010652; -; .
HOGENOMHBG591160; -; .
OMANRSHAPY; -; .
ProtClustDBPRK09027; -; .
BioCycEcoCyc:CYTIDEAM-MONOMER; -; .
BioCycMetaCyc:CYTIDEAM-MONOMER; -; .
GenevestigatorP0ABF6; -; .
GOGO:0005829; C:cytosol; IDA:UniProtKB; .
GOGO:0004126; F:cytidine deaminase activity; IDA:EcoliWiki; .
GOGO:0001884; F:pyrimidine nucleoside binding; IDA:EcoliWiki; .
GOGO:0008270; F:zinc ion binding; IDA:EcoliWiki; .
GOGO:0015949; P:nucleobase-containing small molecule interconversion; IDA:EcoliWiki; .
HAMAPMF_01558; Cyt_deam; 1; -
InterProIPR016192; APOBEC/CMP_deaminase_Zn-bd; .
InterProIPR002125; CMP_dCMP_Zn-bd; .
InterProIPR013171; Cyd/dCyd_deaminase_Zn-bd; .
InterProIPR006263; Cyt_deam_dimer; .
InterProIPR016193; Cytidine_deaminase-like; .
InterProIPR020797; Cytidine_deaminase_bacteria; .
PANTHERPTHR11644:SF12; PTHR11644:SF12; 1; .
PfamPF00383; dCMP_cyt_deam_1; 1; .
PfamPF08211; dCMP_cyt_deam_2; 1; .
PIRSFPIRSF006334; Cdd_plus_pseudo; 1; .
SUPFAMSSF53927; Cytidine_deaminase-like; 2; .
TIGRFAMsTIGR01355; Cyt_deam_dimer; 1; .
PROSITEPS00903; CYT_DCMP_DEAMINASES; 1; .



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