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Sample Preparation and Post-separation Analysis



Searching in 'SWISS-2DPAGE' for entry matching: P12758




SWISS-2DPAGE:  P12758


P12758


General information about the entry
View entry in simple text format
Entry nameUDP_ECOLI
Primary accession numberP12758
integrated into SWISS-2DPAGE on August 1, 1995 (release 2)
2D Annotations were last modified onMarch 31, 2004 (version 3)
General Annotations were last modified on May 19, 2011 (version 12)
Name and origin of the protein
DescriptionRecName: Full=Uridine phosphorylase; Short=UPase; Short=UrdPase; EC=2.4.2.3;.
Gene nameName=udp
OrderedLocusNames=b3831, JW3808
Annotated speciesEscherichia coli [TaxID: 562]
TaxonomyBacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.
References
[1]   MAPPING ON GEL
MEDLINE=96314059; PubMed=8740179; [NCBI, ExPASy, EBI, Israel, Japan]
Pasquali C., Frutiger S., Wilkins M.R., Hughes G.J., Appel R.D., Bairoch A., Schaller D., Sanchez J.-C., Hochstrasser D.F.
''''''Two-dimensional gel electrophoresis of Escherichia coli homogenates: the Escherichia coli SWISS-2DPAGE database'';'';''
Electrophoresis 17(1):547-555(1996)
[2]   MAPPING ON GEL
Vanbogelen R.A., Abshire K.Z., Pertsemlidis A., Clark R.L., Neidhardt F.C.
''''''Gene-protein database of Escherichia coli K-12, edition 6'';'';''
(IN) Neidhardt et al. (eds.)Escherichia coli and Salmonella: Cellular and Molecular Biology (2nd ed.), pp.2067-2117, ASM Press, Washington DC (1996)
[3]   MAPPING ON GEL
PubMed=11680886; [NCBI, ExPASy, EBI, Israel, Japan]
Tonella L., Hoogland C., Binz P.-A., Appel R.D., Hochstrasser D.F., Sanchez J.-C.
''''''New perspectives in the Escherichia coli proteome investigation'';'';''
Proteomics 1(1):409-423(2001)
Comments
  • SUBUNIT: HOMOHEXAMER
2D PAGE maps for identified proteins
How to interpret a protein

ECOLI {Escherichia coli}
Escherichia coli
ECOLI
  map experimental info
  protein estimated location
 
ECOLI

MAP LOCATIONS:
pI=5.86; Mw=27960

MAPPING (identification):
MICROSEQUENCE ANALYSIS [1] AND IDENTIFIED ON 2-D GELS BY VANBOGELEN [2].



ECOLI5.5-6.7 {Escherichia coli(5.5-6.7)}
Escherichia coli
ECOLI5.5-6.7
  map experimental info
  protein estimated location
 
ECOLI5.5-6.7

MAP LOCATIONS:
pI=5.71; Mw=30842

MAPPING (identification):
GEL MATCHING WITH ECOLI5-6 [3].



ECOLI5-6 {Escherichia coli(5-6)}
Escherichia coli
ECOLI5-6
  map experimental info
  protein estimated location
 
ECOLI5-6

MAP LOCATIONS:
pI=5.66; Mw=31754  [identification data]

MAPPING (identification):
Peptide mass fingerprinting [3].

Copyright
This SWISS-2DPAGE entry is copyright the Swiss Institute of Bioinformatics. There are no restrictions on its use by non-profit institutions as long as its content is in no way modified and this statement is not removed. Usage by and for commercial entities requires a license agreement (See http://world-2dpage.expasy.org/swiss-2dpage/docs/license.html or send email from license@isb-sib.ch).
Cross-references
2DBase-EcoliP12758; UDP_ECOLI.
UniProtKB/Swiss-ProtP12758; UDP_ECOLI.
2D PAGE maps for identified proteins
  • How to interpret a protein map
  • You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
  • Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
  • Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed.



External data extracted from UniProtKB/Swiss-Prot
Extracted from UniProtKB/Swiss-Prot, release: 2011_10
Entry nameUDP_ECOLI
Primary accession numberP12758
Secondary accession number(s) Q2M8D6
Sequence was last modified on January 23, 2007 (version 3)
Annotations were last modified on October 19, 2011 (version 121)
Name and origin of the protein
DescriptionRecName: Full=Uridine phosphorylase; Short=UPase; Short=UrdPase; EC=2.4.2.3;
Gene nameName=udp
OrderedLocusNames=b3831, JW3808
Encoded onName=udp; OrderedLocusNames=b3831, JW3808
Keywords3D-structure; Complete proteome; Cytoplasm; Direct protein sequencing; Glycosyltransferase; Reference proteome; Transferase.
Copyright
Copyrighted by the UniProt Consortium, see https://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBLX15689; CAA33724.1; -; Genomic_DNA
EMBLM87049; AAA67626.1; -; Genomic_DNA
EMBLU00096; AAC76834.1; -; Genomic_DNA
EMBLAP009048; BAE77470.1; -; Genomic_DNA
PIRS05491; S05491; .
RefSeqNP_418275.1; NC_000913.2; .
PDB1K3F; X-ray; 2.50 A; A/B/C/D/E/F=1-253
PDB1LX7; X-ray; 2.00 A; A/B=1-253
PDB1RXC; X-ray; 2.35 A; A/B/C/D/E/F/G/H/I/J/K/L=1-253
PDB1RXS; X-ray; 2.80 A; A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R/a/b/c/d/e/h/i/j/k/l/m/o=1-253
PDB1RXU; X-ray; 3.10 A; A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P/Q/R=1-253
PDB1RXY; X-ray; 1.70 A; A/B=1-253
PDB1T0U; X-ray; 2.20 A; A/B=1-253
PDB1TGV; X-ray; 2.20 A; A/B=1-253
PDB1TGY; X-ray; 2.20 A; A/B=1-253
PDB1U1C; X-ray; 2.20 A; A/B/C/D/E/F=2-252
PDB1U1D; X-ray; 2.00 A; A/B/C/D/E/F=2-252
PDB1U1E; X-ray; 2.00 A; A/B/C/D/E/F=2-252
PDB1U1F; X-ray; 2.30 A; A/B/C/D/E/F=2-252
PDB1U1G; X-ray; 1.95 A; A/B/C/D/E/F=2-252
PDB3KVV; X-ray; 1.80 A; A/B/C/D/E/F=1-253
PDBsum1K3F; -; .
PDBsum1LX7; -; .
PDBsum1RXC; -; .
PDBsum1RXS; -; .
PDBsum1RXU; -; .
PDBsum1RXY; -; .
PDBsum1T0U; -; .
PDBsum1TGV; -; .
PDBsum1TGY; -; .
PDBsum1U1C; -; .
PDBsum1U1D; -; .
PDBsum1U1E; -; .
PDBsum1U1F; -; .
PDBsum1U1G; -; .
PDBsum3KVV; -; .
ProteinModelPortalP12758; -; .
SMRP12758; 4-253; .
DIPDIP-11075N; -; .
IntActP12758; 3; .
SWISS-2DPAGEP12758; -; .
2DBase-EcoliP12758; -; .
PRIDEP12758; -; .
EnsemblBacteriaEBESCT00000000009; EBESCP00000000009; EBESCG00000000009; .
EnsemblBacteriaEBESCT00000018165; EBESCP00000017456; EBESCG00000017220; .
GeneID948987; -; .
GenomeReviewsAP009048_GR; JW3808; .
GenomeReviewsU00096_GR; b3831; .
KEGGecj:JW3808; -; .
KEGGeco:b3831; -; .
EchoBASEEB1038; -; .
EcoGeneEG11045; udp; .
eggNOGCOG2820; -; .
GeneTreeEBGT00050000009056; -; .
HOGENOMHBG617197; -; .
OMASTREFTS; -; .
ProtClustDBPRK11178; -; .
BioCycEcoCyc:URPHOS-MONOMER; -; .
BioCycMetaCyc:URPHOS-MONOMER; -; .
DrugBankDB00544; Fluorouracil; .
GenevestigatorP12758; -; .
GOGO:0005829; C:cytosol; IDA:UniProtKB; .
GOGO:0016020; C:membrane; IDA:UniProtKB; .
GOGO:0004850; F:uridine phosphorylase activity; IEA:EC; .
GOGO:0009116; P:nucleoside metabolic process; IEA:InterPro; .
GOGO:0009166; P:nucleotide catabolic process; IEA:InterPro; .
InterProIPR018017; Nucleoside_phosphorylase; .
InterProIPR018016; Nucleoside_phosphorylase_CS; .
InterProIPR000845; Nucleoside_phosphorylase_d; .
InterProIPR010058; Uridine_phosphorylase; .
PANTHERPTHR21234; PNP_UDP; 1; .
PfamPF01048; PNP_UDP_1; 1; .
TIGRFAMsTIGR01718; Uridine-psphlse; 1; .
PROSITEPS01232; PNP_UDP_1; 1; .



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Database constructed and maintained by SIB, using the Make2D-DB II package (ver. 3.10.2) from the World-2DPAGE Constellation of the ExPASy web server