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SWISS-2DPAGE 
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Sample Preparation and Post-separation Analysis



Searching in 'SWISS-2DPAGE' for entry matching: P46850




SWISS-2DPAGE:  P46850


P46850


General information about the entry
View entry in simple text format
Entry nameRTCB_ECOLI
Primary accession numberP46850
integrated into SWISS-2DPAGE on October 31, 1999 (release 11)
2D Annotations were last modified onOctober 1, 2001 (version 2)
General Annotations were last modified on May 19, 2011 (version 8)
Name and origin of the protein
DescriptionRecName: Full=RNA-splicing ligase RtcB; EC=6.5.1.-;.
Gene nameName=rtcB
Synonyms=yhgL
OrderedLocusNames=b3421, JW3384
Annotated speciesEscherichia coli [TaxID: 562]
TaxonomyBacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.
References
[1]   MAPPING ON GEL
PubMed=11680886; [NCBI, ExPASy, EBI, Israel, Japan]
Tonella L., Hoogland C., Binz P.-A., Appel R.D., Hochstrasser D.F., Sanchez J.-C.
''''''New perspectives in the Escherichia coli proteome investigation'';'';''
Proteomics 1(1):409-423(2001)
2D PAGE maps for identified proteins
How to interpret a protein

ECOLI5.5-6.7 {Escherichia coli(5.5-6.7)}
Escherichia coli
ECOLI5.5-6.7
  map experimental info
  protein estimated location
 
ECOLI5.5-6.7

MAP LOCATIONS:
pI=5.68; Mw=33161

MAPPING (identification):
GEL MATCHING WITH ECOLI5-6 [1].



ECOLI5-6 {Escherichia coli(5-6)}
Escherichia coli
ECOLI5-6
  map experimental info
  protein estimated location
 
ECOLI5-6

MAP LOCATIONS:
pI=5.65; Mw=34051  [identification data]

MAPPING (identification):
Peptide mass fingerprinting [1].

Copyright
This SWISS-2DPAGE entry is copyright the Swiss Institute of Bioinformatics. There are no restrictions on its use by non-profit institutions as long as its content is in no way modified and this statement is not removed. Usage by and for commercial entities requires a license agreement (See http://world-2dpage.expasy.org/swiss-2dpage/docs/license.html or send email from legal@sib.swiss).
Cross-references
UniProtKB/Swiss-ProtP46850; RTCB_ECOLI.
2D PAGE maps for identified proteins
  • How to interpret a protein map
  • You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
  • Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
  • Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed.



External data extracted from UniProtKB/Swiss-Prot
Extracted from UniProtKB/Swiss-Prot, release: 2011_10
Entry nameRTCB_ECOLI
Primary accession numberP46850
Secondary accession number(s) P76690 Q2M785
Sequence was last modified on July 15, 1998 (version 3)
Annotations were last modified on October 19, 2011 (version 64)
Name and origin of the protein
DescriptionRecName: Full=RNA-splicing ligase RtcB; EC=6.5.1.-;
Gene nameName=rtcB
Synonyms=yhgL
OrderedLocusNames=b3421, JW3384
Encoded onName=rtcB; Synonyms=yhgL; OrderedLocusNames=b3421, JW3384
KeywordsComplete proteome; Ligase; Metal-binding; Reference proteome; Zinc.
Copyright
Copyrighted by the UniProt Consortium, see https://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBLU18997; AAA58219.1; -; Genomic_DNA
EMBLU00096; AAC76446.1; -; Genomic_DNA
EMBLAP009048; BAE77871.1; -; Genomic_DNA
PIRH65137; H65137; .
RefSeqNP_417879.1; NC_000913.2; .
ProteinModelPortalP46850; -; .
SMRP46850; 3-408; .
IntActP46850; 20; .
SWISS-2DPAGEP46850; -; .
EnsemblBacteriaEBESCT00000000985; EBESCP00000000985; EBESCG00000000812; .
EnsemblBacteriaEBESCT00000017447; EBESCP00000016738; EBESCG00000016503; .
GeneID947929; -; .
GenomeReviewsAP009048_GR; JW3384; .
GenomeReviewsU00096_GR; b3421; .
KEGGecj:JW3384; -; .
KEGGeco:b3421; -; .
EchoBASEEB2774; -; .
EcoGeneEG12939; rtcB; .
eggNOGCOG1690; -; .
GeneTreeEBGT00050000009926; -; .
HOGENOMHBG364447; -; .
OMAIFKHLAV; -; .
ProtClustDBCLSK880652; -; .
BioCycEcoCyc:G7751-MONOMER; -; .
BioCycMetaCyc:G7751-MONOMER; -; .
GenevestigatorP46850; -; .
GOGO:0016874; F:ligase activity; IEA:UniProtKB-KW; .
GOGO:0046872; F:metal ion binding; IEA:UniProtKB-KW; .
GOGO:0006396; P:RNA processing; IDA:UniProtKB; .
GOGO:0042245; P:RNA repair; TAS:UniProtKB; .
InterProIPR001233; UPF0027; .
PANTHERPTHR11118; UPF0027; 1; .
PfamPF01139; UPF0027; 1; .
SUPFAMSSF103365; UPF0027; 1; .
PROSITEPS01288; UPF0027; 1; .



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Database constructed and maintained by SIB, using the Make2D-DB II package (ver. 3.10.2) from the World-2DPAGE Constellation of the ExPASy web server