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World-2DPAGE Repository (CGL14067-2DPAGE)

A public standards-compliant repository for gel-based proteomics data published in the literature



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Search by 
[accession number] 
[description, ID or gene] 
[author's name] 
[spot ID / serial number] 
[identification methods] 
[pI / Mw range] 
[combined fields] 

Maps 
[experimental info] 
[protein list] 
[graphical interface]


    
Databases:


use 'Ctrl' to select several
databases, or choose 'All'


Query Remote Interfaces:
[All Interfaces]
SWISS-2DPAGE
World-2DPAGE Portal

Exclude local DBs
has only effect if a remote
interface is selected
     

Summary of the current content (Last updated: 19-Dec-2007)

AccessionDatabase NameSpeciesMapsIdentified spotsIdentified proteinsReferencesContact
0001CGL14067-2DPAGE12166138PROTEOMICS (2007) 7(23): 4317-4322Prof. Atsushi Yokota
0002NIBR 2D-PAGE12965775PROTEOMICS (2007) 7(7): 992-1003Dr. Hans Voshol

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   [Facts and statistics]

Search by
You can perform simple search queries:

  • by accession number: search World-2DPAGE Repository by accession number or by entry name (AC or ID)
  • by description, ID or gene name: search by description (DE), entry name (ID), gene name (GN) or UniProtKB/Swiss-Prot keywords (KW)
  • by author: search authors list by giving an AC or an ID, or list all entries for a given author
  • by spot id / serial number: search by spot ID / serial numbers
  • by identification methods: search by identification methods
  • by pI/Mw range: search for spots located within a pI/Mw range. You can limit your search to a specific map
You can also perform much more complex queries using the 'combined fields' link. This option lets you construct your own query by combining various keywords and boolean operators (SRS-like interface). You can choose the output fields to show and decide to save results as a text file on your own computer.

Maps
Several actions can be performed for the maps:
  • 'experimental info' allows you to display experimental information for a given map.
  • 'protein list' allows you to list in a table all the protein entries identified for a given reference map, with related 2-DE information on spot ID, experimental pI and Mw (read from map), mapping procedures, references, etc.. You can export the table in text format to your computer.
  • 'graphical interface' is the viewer for the maps. This viewer lets you navigate graphically and zoom between the different maps. You can display all spots or just show those of particular interest. By dragging your mouse over the different spots, available experimental information will be dynamically displayed.


Databases (or distinct projects)
This interface has been configured to access several databases (distinct projects). You may select one individual database, or select, simultaneously, several databases for your queries. To select more than one database, use the 'Ctrl' button while clicking on the database name.

Query Remote Interfaces
This interface has also been configured to automatically access other similar remote interfaces. You may select one or several interfaces for your queries. Please, note that there are some few limitations on queries with remote interfaces (e.g. the 'graphical interface' does not directly access remote databases).
Note also that, by default, there is at least one selected 'local' database. If you want to exclude 'local' databases from your queries (restricting queries to remote interfaces), turn on the 'Exclude local DBs' box.
Finally, you should be aware that selecting many remote databases simultaneously will cause a slow down of your queries' response.


World-2DPAGE Repository image


Gateways to other related servers


Database constructed and maintained by Christine Hoogland, using the Make2D-DB II package (ver. 2.50.2) from the World-2DPAGE Constellation of the ExPASy web server    Valid HTML 4.01 Transitional

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