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Sample Preparation and Post-separation Analysis



Searching in 'SWISS-2DPAGE' for entry matching: P0ABP8




SWISS-2DPAGE:  P0ABP8


P0ABP8


General information about the entry
View entry in simple text format
Entry nameDEOD_ECOLI
Primary accession numberP0ABP8
Secondary accession number(s) P09743
integrated into SWISS-2DPAGE on May 15, 2003 (release 16)
2D Annotations were last modified onMay 15, 2003 (version 1)
General Annotations were last modified on May 19, 2011 (version 6)
Name and origin of the protein
DescriptionRecName: Full=Purine nucleoside phosphorylase deoD-type; Short=PNP; EC=2.4.2.1; AltName: Full=Inosine phosphorylase;.
Gene nameName=deoD
Synonyms=pup
OrderedLocusNames=b4384, JW4347
Annotated speciesEscherichia coli [TaxID: 562]
TaxonomyBacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.
References
[1]   MAPPING ON GEL
PubMed=12469338; [NCBI, ExPASy, EBI, Israel, Japan]
Yan J.X., Devenish A.T., Wait R., Stone T., Lewis S., Fowler S.
''''''Fluorescence 2-D difference gel electrophoresis and mass spectrometry based proteomic analysis of E. coli'';'';''
Proteomics 2(1):1682-1698(2002)
Comments
  • SUBUNIT: HOMOHEXAMER
2D PAGE maps for identified proteins
How to interpret a protein

ECOLI-DIGE4.5-6.5 {Escherichia coli DIGE (4.5-6.5)}
Escherichia coli
ECOLI-DIGE4.5-6.5
  map experimental info
  protein estimated location
 
ECOLI-DIGE4.5-6.5

MAP LOCATIONS:
pI=5.40; Mw=25098  [identification data]

EXPRESSION:
decrease after benzoic acid treatment [1].

MAPPING (identification):
Tandem mass spectrometry [1].

Copyright
This SWISS-2DPAGE entry is copyright the Swiss Institute of Bioinformatics. There are no restrictions on its use by non-profit institutions as long as its content is in no way modified and this statement is not removed. Usage by and for commercial entities requires a license agreement (See http://world-2dpage.expasy.org/swiss-2dpage/docs/license.html or send email from license@isb-sib.ch).
Cross-references
UniProtKB/Swiss-ProtP0ABP8; DEOD_ECOLI.
2D PAGE maps for identified proteins
  • How to interpret a protein map
  • You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
  • Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
  • Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed.



External data extracted from UniProtKB/Swiss-Prot
Extracted from UniProtKB/Swiss-Prot, release: 2011_10
Entry nameDEOD_ECOLI
Primary accession numberP0ABP8
Secondary accession number(s) P09743 Q2M5T3
Sequence was last modified on January 23, 2007 (version 2)
Annotations were last modified on October 19, 2011 (version 59)
Name and origin of the protein
DescriptionRecName: Full=Purine nucleoside phosphorylase deoD-type; Short=PNP; EC=2.4.2.1; AltName: Full=Inosine phosphorylase;
Gene nameName=deoD
Synonyms=pup
OrderedLocusNames=b4384, JW4347
Encoded onName=deoD; Synonyms=pup; OrderedLocusNames=b4384, JW4347
Keywords3D-structure; Acetylation; Complete proteome; Direct protein sequencing; Glycosyltransferase; Reference proteome; Transferase.
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBLM60917; AAA24401.1; -; Genomic_DNA
EMBLU14003; AAA97280.1; -; Genomic_DNA
EMBLU00096; AAC77337.1; -; Genomic_DNA
EMBLAP009048; BAE78373.1; -; Genomic_DNA
EMBLX05629; CAA29114.1; -; Genomic_DNA
PIRA41143; A27854; .
RefSeqNP_418801.1; NC_000913.2; .
PDB1A69; X-ray; 2.10 A; A/B/C=2-239
PDB1ECP; X-ray; 2.00 A; A/B/C/D/E/F=2-239
PDB1K9S; X-ray; 2.00 A; A/B/C/D/E/F=2-237
PDB1OTX; X-ray; 2.70 A; A/B/C=2-238
PDB1OTY; X-ray; 2.50 A; A/B/C=2-238
PDB1OU4; X-ray; 2.50 A; A/B/C=2-238
PDB1OUM; X-ray; 2.40 A; A/B/C=2-238
PDB1OV6; X-ray; 2.40 A; A/B/C=2-238
PDB1OVG; X-ray; 2.20 A; A/B/C=2-238
PDB1PK7; X-ray; 2.50 A; A/B/C=1-238
PDB1PK9; X-ray; 1.90 A; A/B/C=1-238
PDB1PKE; X-ray; 2.30 A; A/B/C=1-238
PDB1PR0; X-ray; 2.20 A; A/B/C=1-239
PDB1PR1; X-ray; 2.30 A; A/B/C=1-239
PDB1PR2; X-ray; 2.30 A; A/B/C=1-239
PDB1PR4; X-ray; 2.40 A; A/B/C=1-239
PDB1PR5; X-ray; 2.50 A; A/B/C=1-239
PDB1PR6; X-ray; 2.10 A; A/B/C=1-239
PDB1PW7; X-ray; 2.00 A; A/B/C=1-239
PDBsum1A69; -; .
PDBsum1ECP; -; .
PDBsum1K9S; -; .
PDBsum1OTX; -; .
PDBsum1OTY; -; .
PDBsum1OU4; -; .
PDBsum1OUM; -; .
PDBsum1OV6; -; .
PDBsum1OVG; -; .
PDBsum1PK7; -; .
PDBsum1PK9; -; .
PDBsum1PKE; -; .
PDBsum1PR0; -; .
PDBsum1PR1; -; .
PDBsum1PR2; -; .
PDBsum1PR4; -; .
PDBsum1PR5; -; .
PDBsum1PR6; -; .
PDBsum1PW7; -; .
ProteinModelPortalP0ABP8; -; .
SMRP0ABP8; 2-238; .
DIPDIP-36195N; -; .
IntActP0ABP8; 2; .
SWISS-2DPAGEP0ABP8; -; .
PRIDEP0ABP8; -; .
EnsemblBacteriaEBESCT00000002229; EBESCP00000002229; EBESCG00000001826; .
EnsemblBacteriaEBESCT00000016138; EBESCP00000015429; EBESCG00000015198; .
GeneID945654; -; .
GenomeReviewsAP009048_GR; JW4347; .
GenomeReviewsU00096_GR; b4384; .
KEGGecj:JW4347; -; .
KEGGeco:b4384; -; .
EchoBASEEB0218; -; .
EcoGeneEG10222; deoD; .
eggNOGCOG0813; -; .
GeneTreeEBGT00050000009056; -; .
HOGENOMHBG617197; -; .
OMASFETHAF; -; .
ProtClustDBPRK05819; -; .
BioCycEcoCyc:DEOD-MONOMER; -; .
BioCycMetaCyc:DEOD-MONOMER; -; .
DrugBankDB00194; Vidarabine; .
GenevestigatorP0ABP8; -; .
GOGO:0005829; C:cytosol; IDA:UniProtKB; .
GOGO:0016020; C:membrane; IDA:UniProtKB; .
GOGO:0004731; F:purine-nucleoside phosphorylase activity; IDA:EcoCyc; .
GOGO:0006152; P:purine nucleoside catabolic process; IMP:EcoCyc; .
GOGO:0019686; P:purine nucleoside interconversion; IDA:EcoCyc; .
HAMAPMF_01627; Pur_nucleosid_phosp; 1; -
InterProIPR004402; DeoD; .
InterProIPR018017; Nucleoside_phosphorylase; .
InterProIPR018016; Nucleoside_phosphorylase_CS; .
InterProIPR000845; Nucleoside_phosphorylase_d; .
PANTHERPTHR21234; PNP_UDP; 1; .
PfamPF01048; PNP_UDP_1; 1; .
TIGRFAMsTIGR00107; DeoD; 1; .
PROSITEPS01232; PNP_UDP_1; 1; .



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Database constructed and maintained by SIB, using the Make2D-DB II package (ver. 3.10.2) from the World-2DPAGE Constellation of the ExPASy web server