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Sample Preparation and Post-separation Analysis



Searching in 'SWISS-2DPAGE' for entry matching: ZNUA_ECOLI




SWISS-2DPAGE:  ZNUA_ECOLI


ZNUA_ECOLI


General information about the entry
View entry in simple text format
Entry nameZNUA_ECOLI
Primary accession numberP39172
integrated into SWISS-2DPAGE on September 1, 1997 (release 6)
2D Annotations were last modified onMay 15, 2003 (version 4)
General Annotations were last modified on May 19, 2011 (version 13)
Name and origin of the protein
DescriptionRecName: Full=High-affinity zinc uptake system protein znuA; Flags: Precursor;.
Gene nameName=znuA
Synonyms=yebL, yzzP
OrderedLocusNames=b1857, JW5831
Annotated speciesEscherichia coli [TaxID: 562]
TaxonomyBacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.
References
[1]   MAPPING ON GEL
MEDLINE=98410772; PubMed=9740056; [NCBI, ExPASy, EBI, Israel, Japan]
Tonella L., Walsh B.J., Sanchez J.-C., Ou K., Wilkins M.R., Tyler M., Frutiger S., Gooley A.A., Pescaru I., Appel R.D., Yan J.X., Bairoch A., Hoogland C., Morch F.S., Hughes G.J., Williams K.L., Hochstrasser D.F.
'''''''98 Escherichia coli SWISS-2DPAGE database update'';'';''
Electrophoresis 19(1):1960-1971(1998)
[2]   MAPPING ON GEL
PubMed=11680886; [NCBI, ExPASy, EBI, Israel, Japan]
Tonella L., Hoogland C., Binz P.-A., Appel R.D., Hochstrasser D.F., Sanchez J.-C.
''''''New perspectives in the Escherichia coli proteome investigation'';'';''
Proteomics 1(1):409-423(2001)
[3]   MAPPING ON GEL
PubMed=12469338; [NCBI, ExPASy, EBI, Israel, Japan]
Yan J.X., Devenish A.T., Wait R., Stone T., Lewis S., Fowler S.
''''''Fluorescence 2-D difference gel electrophoresis and mass spectrometry based proteomic analysis of E. coli'';'';''
Proteomics 2(1):1682-1698(2002)
2D PAGE maps for identified proteins
How to interpret a protein

ECOLI {Escherichia coli}
Escherichia coli
ECOLI
  map experimental info
  protein estimated location
 
ECOLI

MAP LOCATIONS:
pI=4.80; Mw=40251
pI=5.41; Mw=32899  [identification data]
pI=5.39; Mw=31992  [identification data]

MAPPING (identification):
AMINO ACID COMPOSITION AND SEQUENCE TAG (AVVA) [1].



ECOLI4.5-5.5 {Escherichia coli(4.5-5.5)}
Escherichia coli
ECOLI4.5-5.5
  map experimental info
  protein estimated location
 
ECOLI4.5-5.5

MAP LOCATIONS:
pI=5.58; Mw=34287  [identification data]

MAPPING (identification):
Peptide mass fingerprinting [2].



ECOLI5-6 {Escherichia coli(5-6)}
Escherichia coli
ECOLI5-6
  map experimental info
  protein estimated location
 
ECOLI5-6

MAP LOCATIONS:
pI=5.51; Mw=37702  [identification data]

MAPPING (identification):
Peptide mass fingerprinting [2].



ECOLI-DIGE4.5-6.5 {Escherichia coli DIGE (4.5-6.5)}
Escherichia coli
ECOLI-DIGE4.5-6.5
  map experimental info
  protein estimated location
 
ECOLI-DIGE4.5-6.5

MAP LOCATIONS:
pI=5.47; Mw=32751  [identification data]
pI=5.49; Mw=32476  [identification data]

EXPRESSION:
decrease after benzoic acid treatment [3].

MAPPING (identification):
Tandem mass spectrometry [3].

Copyright
This SWISS-2DPAGE entry is copyright the Swiss Institute of Bioinformatics. There are no restrictions on its use by non-profit institutions as long as its content is in no way modified and this statement is not removed. Usage by and for commercial entities requires a license agreement (See http://world-2dpage.expasy.org/swiss-2dpage/docs/license.html or send email from license@isb-sib.ch).
Cross-references
2DBase-EcoliP39172; ZNUA_ECOLI.
UniProtKB/Swiss-ProtP39172; ZNUA_ECOLI.
2D PAGE maps for identified proteins
  • How to interpret a protein map
  • You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
  • Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
  • Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed.



External data extracted from UniProtKB/Swiss-Prot
Extracted from UniProtKB/Swiss-Prot, release: 2011_10
Entry nameZNUA_ECOLI
Primary accession numberP39172
Secondary accession number(s) P76284
Sequence was last modified on June 1, 2001 (version 4)
Annotations were last modified on October 19, 2011 (version 92)
Name and origin of the protein
DescriptionRecName: Full=High-affinity zinc uptake system protein znuA; Flags: Precursor;
Gene nameName=znuA
Synonyms=yebL, yzzP
OrderedLocusNames=b1857, JW5831
Encoded onName=znuA; Synonyms=yebL, yzzP; OrderedLocusNames=b1857, JW5831
Keywords3D-structure; Complete proteome; Direct protein sequencing; Ion transport; Metal-binding; Periplasm; Reference proteome; Signal; Transport; Zinc; Zinc transport.
Copyright
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBLU38702; AAA81030.1; ALT_INIT; Genomic_DNA
EMBLU00096; AAC74927.2; -; Genomic_DNA
EMBLAP009048; BAA15665.2; -; Genomic_DNA
PIRA64948; A64948; .
RefSeqNP_416371.4; NC_000913.2; .
PDB2OGW; X-ray; 1.83 A; A/B=1-310
PDB2OSV; X-ray; 1.75 A; A/B=27-310
PDB2PRS; X-ray; 1.70 A; A/B=27-310
PDB2PS0; X-ray; 2.00 A; A/B=27-310
PDB2PS3; X-ray; 2.47 A; A/B=27-310
PDB2PS9; X-ray; 2.15 A; A/B=27-310
PDBsum2OGW; -; .
PDBsum2OSV; -; .
PDBsum2PRS; -; .
PDBsum2PS0; -; .
PDBsum2PS3; -; .
PDBsum2PS9; -; .
ProteinModelPortalP39172; -; .
SMRP39172; 27-309; .
DIPDIP-12949N; -; .
TCDB3.A.1.15.5; ATP-binding cassette (ABC) superfamily; .
SWISS-2DPAGEP39172; -; .
2DBase-EcoliP39172; -; .
EnsemblBacteriaEBESCT00000003311; EBESCP00000003311; EBESCG00000002715; .
EnsemblBacteriaEBESCT00000017951; EBESCP00000017242; EBESCG00000017007; .
GeneID946375; -; .
GenomeReviewsAP009048_GR; JW5831; .
GenomeReviewsU00096_GR; b1857; .
KEGGecj:JW5831; -; .
KEGGeco:b1857; -; .
EchoBASEEB2543; -; .
EcoGeneEG12678; znuA; .
eggNOGCOG4531; -; .
GeneTreeEBGT00050000011395; -; .
HOGENOMHBG731008; -; .
OMAGYFTINP; -; .
ProtClustDBPRK09545; -; .
BioCycEcoCyc:ZNUA-MONOMER; -; .
GenevestigatorP39172; -; .
GOGO:0042597; C:periplasmic space; IEA:UniProtKB-SubCell; .
GOGO:0046872; F:metal ion binding; IEA:UniProtKB-KW; .
GOGO:0007155; P:cell adhesion; IEA:InterPro; .
GOGO:0006829; P:zinc ion transport; IEA:UniProtKB-KW; .
InterProIPR006127; ABC_transptr_metal-bd; .
InterProIPR006128; Lipoprotein_4; .
PfamPF01297; SBP_bac_9; 1; .
PRINTSPR00690; ADHESNFAMILY; .



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Database constructed and maintained by SIB, using the Make2D-DB II package (ver. 3.10.2) from the World-2DPAGE Constellation of the ExPASy web server