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SWISS-2DPAGE

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It will be discontinued on 31-May-2024.


SWISS-2DPAGE 
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Sample Preparation and Post-separation Analysis



Searching in 'SWISS-2DPAGE' for entry matching: P0AGD3




SWISS-2DPAGE:  P0AGD3


P0AGD3


General information about the entry
View entry in simple text format
Entry nameSODF_ECOLI
Primary accession numberP0AGD3
Secondary accession number(s) P09157
integrated into SWISS-2DPAGE on September 1, 1997 (release 6)
2D Annotations were last modified onMay 15, 2003 (version 3)
General Annotations were last modified on May 19, 2011 (version 11)
Name and origin of the protein
DescriptionRecName: Full=Superoxide dismutase [Fe]; EC=1.15.1.1;.
Gene nameName=sodB
OrderedLocusNames=b1656, JW1648
Annotated speciesEscherichia coli [TaxID: 562]
TaxonomyBacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.
References
[1]   MAPPING ON GEL
MEDLINE=98410772; PubMed=9740056; [NCBI, Expasy, EBI, Israel, Japan]
Tonella L., Walsh B.J., Sanchez J.-C., Ou K., Wilkins M.R., Tyler M., Frutiger S., Gooley A.A., Pescaru I., Appel R.D., Yan J.X., Bairoch A., Hoogland C., Morch F.S., Hughes G.J., Williams K.L., Hochstrasser D.F.
'''''''98 Escherichia coli SWISS-2DPAGE database update'';'';''
Electrophoresis 19(1):1960-1971(1998)
[2]   MAPPING ON GEL
MEDLINE=80159887; PubMed=6988414; [NCBI, Expasy, EBI, Israel, Japan]
Bloch P.L., Phillips T.A., Neidhardt F.C.
''''''Protein identifications of O'Farrell two-dimensional gels: locations of 81 Escherichia coli proteins'';'';''
J. Bacteriol. 141(1):1409-1420(1980)
[3]   MAPPING ON GEL
PubMed=11680886; [NCBI, Expasy, EBI, Israel, Japan]
Tonella L., Hoogland C., Binz P.-A., Appel R.D., Hochstrasser D.F., Sanchez J.-C.
''''''New perspectives in the Escherichia coli proteome investigation'';'';''
Proteomics 1(1):409-423(2001)
2D PAGE maps for identified proteins
How to interpret a protein

ECOLI {Escherichia coli}
Escherichia coli
ECOLI
  map experimental info
  protein estimated location
 
ECOLI

MAP LOCATIONS:
pI=5.53; Mw=22150

MAPPING (identification):
AMINO ACID COMPOSITION AND SEQUENCE TAG (SFELP) [1] AND IDENTIFIED ON 2-D GELS BY BLOCH [2].



ECOLI5-6 {Escherichia coli(5-6)}
Escherichia coli
ECOLI5-6
  map experimental info
  protein estimated location
 
ECOLI5-6

MAP LOCATIONS:
pI=5.49; Mw=25158  [identification data]
pI=5.45; Mw=21312  [identification data]

MAPPING (identification):
Peptide mass fingerprinting [3].

Copyright
This SWISS-2DPAGE entry is copyright the Swiss Institute of Bioinformatics. There are no restrictions on its use by non-profit institutions as long as its content is in no way modified and this statement is not removed. Usage by and for commercial entities requires a license agreement (See http://world-2dpage.expasy.org/swiss-2dpage/docs/license.html or send email from legal@sib.swiss).
Cross-references
ECO2DBASEF021.3; 6TH EDITION.
UniProtKB/Swiss-ProtP0AGD3; SODF_ECOLI.
2D PAGE maps for identified proteins
  • How to interpret a protein map
  • You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
  • Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
  • Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed.



External data extracted from UniProtKB/Swiss-Prot
Extracted from UniProtKB/Swiss-Prot, release: 2011_10
Entry nameSODF_ECOLI
Primary accession numberP0AGD3
Secondary accession number(s) P09157
Sequence was last modified on January 23, 2007 (version 2)
Annotations were last modified on October 19, 2011 (version 58)
Name and origin of the protein
DescriptionRecName: Full=Superoxide dismutase [Fe]; EC=1.15.1.1;
Gene nameName=sodB
OrderedLocusNames=b1656, JW1648
Encoded onName=sodB; OrderedLocusNames=b1656, JW1648
Keywords3D-structure; Acetylation; Complete proteome; Direct protein sequencing; Iron; Metal-binding; Oxidoreductase; Reference proteome.
Copyright
Copyrighted by the UniProt Consortium, see https://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBLJ03511; AAA24637.1; -; Genomic_DNA
EMBLU00096; AAC74728.1; -; Genomic_DNA
EMBLAP009048; BAA15422.1; -; Genomic_DNA
PIRA29940; DSECF; .
RefSeqNP_416173.1; NC_000913.2; .
PDB1ISA; X-ray; 1.80 A; A/B=1-193
PDB1ISB; X-ray; 1.85 A; A/B=1-193
PDB1ISC; X-ray; 1.80 A; A/B=1-193
PDB1ZA5; X-ray; 1.80 A; A/B=2-192
PDB2BKB; X-ray; 1.70 A; A/B/C/D=2-192
PDB2NYB; X-ray; 1.10 A; A/B/C/D=2-192
PDBsum1ISA; -; .
PDBsum1ISB; -; .
PDBsum1ISC; -; .
PDBsum1ZA5; -; .
PDBsum2BKB; -; .
PDBsum2NYB; -; .
ProteinModelPortalP0AGD3; -; .
SMRP0AGD3; 2-193; .
IntActP0AGD3; 6; .
SWISS-2DPAGEP0AGD3; -; .
ECO2DBASEF021.3; 6TH EDITION; .
EnsemblBacteriaEBESCT00000001410; EBESCP00000001410; EBESCG00000001175; .
EnsemblBacteriaEBESCT00000017041; EBESCP00000016332; EBESCG00000016100; .
GeneID944953; -; .
GenomeReviewsAP009048_GR; JW1648; .
GenomeReviewsU00096_GR; b1656; .
KEGGecj:JW1648; -; .
KEGGeco:b1656; -; .
EchoBASEEB0947; -; .
EcoGeneEG10954; sodB; .
eggNOGCOG0605; -; .
GeneTreeEBGT00050000009596; -; .
HOGENOMHBG507761; -; .
OMALNWEFAA; -; .
ProtClustDBPRK10543; -; .
BioCycEcoCyc:SUPEROX-DISMUTFE-MONOMER; -; .
BioCycMetaCyc:SUPEROX-DISMUTFE-MONOMER; -; .
GenevestigatorP0AGD3; -; .
GOGO:0005829; C:cytosol; IDA:UniProtKB; .
GOGO:0016020; C:membrane; IDA:UniProtKB; .
GOGO:0005506; F:iron ion binding; IPI:EcoliWiki; .
GOGO:0004784; F:superoxide dismutase activity; IDA:EcoliWiki; .
GOGO:0019430; P:removal of superoxide radicals; IDA:EcoliWiki; .
InterProIPR001189; Mn/Fe_SOD; .
InterProIPR019833; Mn/Fe_SOD_BS; .
InterProIPR019832; Mn/Fe_SOD_C; .
InterProIPR019831; Mn/Fe_SOD_N; .
PANTHERPTHR11404; SODismutase; 1; .
PfamPF02777; Sod_Fe_C; 1; .
PfamPF00081; Sod_Fe_N; 1; .
PIRSFPIRSF000349; SODismutase; 1; .
PRINTSPR01703; MNSODISMTASE; .
SUPFAMSSF46609; SODismutase; 1; .
SUPFAMSSF54719; SODismutase; 1; .
PROSITEPS00088; SOD_MN; 1; .



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Database constructed and maintained by SIB, using the Make2D-DB II package (ver. 3.10.2) from the World-2DPAGE Constellation of the Expasy web server