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Searching in 'World-2DPAGE Repository [0030]' for entry matching: HNRPK_RAT

World-2DPAGE Repository (0030):  HNRPK_RAT


General information about the entry
View entry in simple text format
Entry nameHNRPK_RAT
Primary accession numberP61980
integrated into World-2DPAGE Repository (0030) on November 9, 2010 (release 1)
2D Annotations were last modified onJune 21, 2011 (version 2)
General Annotations were last modified on November 23, 2011 (version 2)
Name and origin of the protein
DescriptionRecName: Full=Heterogeneous nuclear ribonucleoprotein K; Short=hnRNP K; AltName: Full=dC stretch-binding protein; Short=CSBP;.
Gene nameName=Hnrnpk
Annotated speciesRattus norvegicus (Rat) [TaxID: 10116]
TaxonomyEukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus.
D'Hertog W., Maris M., Thorrez L., Waelkens E., Overbergh L., Mathieu C.
''Two-dimensional gel proteome reference map of INS-1E cells''
Proteomics 11(7):1365-1369 (2011)
2D PAGE maps for identified proteins
How to interpret a protein

RAT_INS1E_4-7 {INS-1E cell line, a model rat cell line for pancreatic beta cells, PH4-7}
Rattus norvegicus (Rat)
  map experimental info

pI=5.07; Mw=75877  [identification data]
pI=5.28; Mw=73806  [identification data]
pI=5.42; Mw=73298  [identification data]
pI=5.01; Mw=73196  [identification data]
pI=5.07; Mw=72391  [identification data]
pI=5.21; Mw=72291  [identification data]
pI=5.29; Mw=71991  [identification data]
pI=5.14; Mw=71792  [identification data]
pI=5.33; Mw=71594  [identification data]
pI=5.41; Mw=71594  [identification data]
pI=5.64; Mw=67834  [identification data]
pI=5.85; Mw=67087  [identification data]
pI=5.57; Mw=66441  [identification data]
pI=5.78; Mw=66257  [identification data]
pI=5.09; Mw=72893  [identification data]

IDENTIFICATION: SPOT 632: Mascot protein score=193. Number of peptides=5 [1]
SPOT 698: Mascot protein score=143. Number of peptides=5 [1]; SPOT 702: Mascot protein score=80. Number of peptides=4 [1]; SPOT 707: Mascot protein score=205. Number of peptides=7 [1]; SPOT 724: Mascot protein score=341. Number of peptides=7 [1]; SPOT 730: Mascot protein score=29. Number of peptides=2 [1]; SPOT 735: Mascot protein score=141. Number of peptides=4 [1]; SPOT 739: Mascot protein score=29. Number of peptides=2 [1]; SPOT 742: Mascot protein score=102. Number of peptides=2 [1]; SPOT 744: Mascot protein score=158. Number of peptides=6 [1]; SPOT 846: Mascot protein score=115. Number of peptides=6 [1]; SPOT 865: Mascot protein score=673. Number of peptides=9 [1]; SPOT 882: Mascot protein score=109. Number of peptides=6 [1]; SPOT 884: Mascot protein score=330. Number of peptides=7 [1]; SPOT 2998: Mascot protein score=314. Number of peptides=9 [1].
MAPPING (identification):
SPOT 632: Tandem mass spectrometry [1];
SPOT 698: Tandem mass spectrometry [1];
SPOT 702: Tandem mass spectrometry [1];
SPOT 707: Tandem mass spectrometry [1];
SPOT 724: Tandem mass spectrometry [1];
SPOT 730: Tandem mass spectrometry [1];
SPOT 735: Tandem mass spectrometry [1];
SPOT 739: Tandem mass spectrometry [1];
SPOT 742: Tandem mass spectrometry [1];
SPOT 744: Tandem mass spectrometry [1];
SPOT 846: Tandem mass spectrometry [1];
SPOT 865: Tandem mass spectrometry [1];
SPOT 882: Tandem mass spectrometry [1];
SPOT 884: Tandem mass spectrometry [1];
SPOT 2998: Tandem mass spectrometry [1].

Data from Dr. Wannes D'Hertog, Catholic University Leuven, Belgium
UniProtKB/Swiss-ProtP61980; HNRPK_RAT.
World-2DPAGE RepositoryP61980; HNRPK_RAT.

2D PAGE maps for identified proteins
  • How to interpret a protein map
  • You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
  • Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
  • Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed.

External data extracted from UniProtKB/Swiss-Prot
Extracted from UniProtKB/Swiss-Prot, release: 2011_11
Entry nameHNRPK_RAT
Primary accession numberP61980
Secondary accession number(s) Q07244 Q15671 Q60577 Q922Y7 Q96J62
Sequence was last modified on June 7, 2004 (version 1)
Annotations were last modified on November 16, 2011 (version 84)
Name and origin of the protein
DescriptionRecName: Full=Heterogeneous nuclear ribonucleoprotein K; Short=hnRNP K; AltName: Full=dC stretch-binding protein; Short=CSBP;
Gene nameName=Hnrnpk
Encoded onName=Hnrnpk; Synonyms=Hnrpk
KeywordsAcetylation; Complete proteome; Cytoplasm; Direct protein sequencing; DNA-binding; Isopeptide bond; Methylation; mRNA processing; mRNA splicing; Nucleus; Phosphoprotein; Reference proteome; Repeat; Ribonucleoprotein; RNA-binding; Spliceosome; Ubl conjugation.
Copyrighted by the UniProt Consortium, see Distributed under the Creative Commons Attribution-NoDerivs License
EMBLD17711; BAA04566.1; -; mRNA
IPIIPI00780608; -; .
PIRS41495; S41495; .
RefSeqNP_476482.1; NM_057141.1; .
UniGeneRn.11854; -; .
ProteinModelPortalP61980; -; .
SMRP61980; 40-215; 385-463; .
IntActP61980; 80; .
MINTMINT-1505757; -; .
STRINGP61980; -; .
PhosphoSiteP61980; -; .
World-2DPAGE0004:P61980; -; .
PRIDEP61980; -; .
EnsemblENSRNOT00000025916; ENSRNOP00000025915; ENSRNOG00000019113; .
GeneID117282; -; .
KEGGrno:117282; -; .
UCSCBC061867; rat; .
CTD3190; -; .
RGD71058; Hnrnpk; .
eggNOGroNOG14775; -; .
GeneTreeENSGT00550000074311; -; .
HOVERGENHBG051916; -; .
InParanoidP61980; -; .
PhylomeDBP61980; -; .
NextBio620239; -; .
ArrayExpressP61980; -; .
GenevestigatorP61980; -; .
GermOnlineENSRNOG00000019113; Rattus norvegicus; .
GOGO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell; .
GOGO:0005654; C:nucleoplasm; IEA:UniProtKB-SubCell; .
GOGO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW; .
GOGO:0003723; F:RNA binding; IEA:UniProtKB-KW; .
GOGO:0003697; F:single-stranded DNA binding; IDA:RGD; .
GOGO:0006397; P:mRNA processing; IEA:UniProtKB-KW; .
GOGO:0008380; P:RNA splicing; IEA:UniProtKB-KW; .
InterProIPR004087; KH; .
InterProIPR004088; KH_type_1; .
InterProIPR018111; KH_type_1_subgr; .
InterProIPR012987; ROK_N; .
KOK12886; -; .
PfamPF00013; KH_1; 3; .
PfamPF08067; ROKNT; 1; .
SMARTSM00322; KH; 3; .
PROSITEPS50084; KH_TYPE_1; 3; .

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Database constructed and maintained by SIB, using the Make2D-DB II package (ver. 3.10.2) from the World-2DPAGE Constellation of the Expasy web server