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Index to 2-D PAGE databases and services

This page contains references to known 2-D PAGE database servers, as well as to 2-D PAGE related servers and services. You may also find related information in the Proteomics Links page of the Swiss Proteomics Society.

For a reference to federated 2-D PAGE database, see Appel et Al., Electrophoresis 17, 1996, 540-546, 1996.

[2-DE databases][Services & Software][Journals & Societies][Meetings]

2-DE databases
Guidelines for building a federated 2-DE database
Add or remove a link from this list

Database servers: federated federated partially partially federated other other

How to link to specific entry of these databases

Multi species
federatedWorld-2DPAGE PortalA dynamic portal to query simultaneously World-Wide gel-based proteomics databases
federatedWorld-2DPAGE RepositoryA public standards-compliant repository for gel-based proteomics data published in the literature
federatedSWISS-2DPAGE SIB Swiss Institute of BioinformaticsHumanLiver, Plasma, HepG2, Red blood cells, Lymphoma, HepG2 Secreted Proteins, Cerebrospinal Fluid, Macrophage Like Cell Line (U937), Erythroleukemia Cell, Platelet, Kidney, Promyelocytic Leukemia Cells (HL60), Colorectal epithelia cells, Colorectal adenocarcinoma cell line (DL-1), Soluble nuclear proteins and matrix from liver tissue, Nucleoli from Hela cells (1D and 2D), Lymphocytes
Mus musculusLiver, Gastrocnemius muscle, Pancreatic islet cells, Brown adipose tissue, White adipose tissue, Soluble nuclear proteins and matrix from liver tissue
Arabidopsis thaliana, Dictyostelium discoideum, Escherichia coli (several pI ranges and DIGE 4.5-6.5), Saccharomyces cerevisiae, Staphylococcus aureus (N315)
federatedSIENA-2DPAGE Department of Molecular Biology, University of Siena, ItalyHumanBreast ductal carcinoma and histologically normal tissue, Amniotic fluid
Chlamydia trachomatis, Caenorhabditis elegans
federatedUCD 2D-PAGE The UCD Conway Institute Proteome Research Centre (CIPRC), University College Dublin, Ireland HumanBrain cortex, Heart ventricle, Endothelial cell, Neutrophil,
DogHeart ventricle
RatHeart ventricle
MouseSpinal cord
Guinea Pig
Saccharomyces cerevisiae (Baker's yeast)
federated 2-DE database Max Planck Institute for Infection Biology, Berlin, GermanyHumanJurkat T-cells, synovial fluid exosomes
MouseMammary gland, urea soluble lens proteins
Ratliver and muscle 20S proteasome subtype II & IV
Bacillus amyloliquefaciens, Bacillus anthracis, Bartonella henselae, Borrelia garinii, Chlamydia pneumoniae, Chlamydophila pneumoniae, Francisella tularensis, Helicobacter pylori, Leishmania mexicana, Mycobacterium bovis, Mycobacterium tuberculosis, Mycoplasma pneumoniae, Paracoccus denitrificans, Vibrio cholerae
federatedDOSAC-COBS 2D-PAGEUniversity of Palermo, Italy Humanvarious breast cancer samples (cells, serum, etc.), dermal fibroblasts, mammary cells, lymphocytes, U937 and HL60 cell lines
federatedRAT HEART-2DPAGEGerman Heart Institute, Berlin, Germany RatHeart
federatedHEART-2DPAGEGerman Heart Institute, Berlin, GermanyHumanHeart (ventricle, atrium)
federatedHSC-2DPAGEHeart Science Centre, Harefield Hospital, UK HumanHeart (ventricle), endothelial cells
Rat, DogHeart (ventricle)
federatedHP-2DPAGE - Heart 2-DE DatabaseMDC & MPIIB, Berlin, GermanyHumanHeart (ventricule)
federatedUSC-OGP 2-DE databaseUniversity of Santiago de Compostela (USC), ES HumanPlatelet (various pI ranges), Uveal melanoma
federatedREPRODUCTION-2DPAGENanjing Medical University, P. R. China HumanOvary, Testis
federatedWashington University Inner Ear Protein DatabaseWashington University, USA HumanPerilymph
Guinea pigEndolymph, organ of Corti, otoconia, tectorial membrane
federatedToothprint - 2-DE gels of dental tissuesUniversity of Otago, Dunedin, New Zealand RatEnamel
federatedJPLS Proteomics databaseLudwig Institute for Cancer Research, Melbourne, AustraliaHumanBreast carcinoma cell line, Placenta, Colorectal cell line
Mousecolonic crypts
partially2-DE Map of Cerebrospinal Fluid ProteomeLee Research Group at Cornell University, USA Human Cerebrospinal Fluid
partially2-DE mapsProteomics and Protein Structure Study Group, at Milano University, Italy CowSera (during dioestrus), positive acute-phase reactants detected in serum from a cow with udder edema (inset C)
RatSerum (control Sprague-Dawley (CD) female and male rats, turpentine-treated rats, diabetic rats, stroke-prone rats), urine (control female and male rats, stroke-prone rats), cerebrospinal fluid (control and stroke-prone rats)
partiallyHUVEC (Proteomics of Human Umbilical Vein Endothelial Cell) Hopital Saint-Antoine, Paris, France HumanUmbilical vein endothelial cell
partiallyTooth Pulp 2-DProteomics Core Facility of the Biocenter Oulu, University of Oulu, Finland HumanTooth pulp tissue (healthy and carious)
partiallyVascular Cell databaseDepartment of Cardiac & Vascular Sciences, University of London, UK Mouseaortic smooth muscle cells, Sca-1+ progenitor cells, Embryonic Stem Cells
otherLECB 2D PAGE Gel Image Data SetsCCR Nanobiology Program, USA Humanleukemias (AML, ALL, CLL, HCL and other), HL-60 cell line, Molt-4 cell line, serum (Fetal Alchohol Syndrome, Rett Syndrome), Urine (cadmium-exposure, mercury-exposure) - 500 gel images
federatedProteome database - Tabacco BY-2 cell suspension culture, Musa meristem, Arabidopsis root at University of Antwerp, Belgium
federatedRice Proteome Database at National Institute of Agrobiological Sciences, Japan
partiallyArabidopsis 2D gel at Institut des Sciences du Végétal, CNRS - Gif-sur-Yvette, France
partiallyArabidopsis Seed Proteome at INRA, Lyon, France
partiallyGABI primary database - 2-DE database for 8 different Arabidospis thaliana tissues (inflorescence, stem, primary leaf, leaf, seed, seedling, silique, root) of the Genomanalyse im biologischen System Pflanze, Germany
partiallyNASC Proteomics database for Arabidopsis data at the Nottingham Arabidopsis Stock Centre, University of Nottingham, UK
partiallyPlant Proteomics database (PROTICdb) at UMR de Genetique Vegetale du Moulon, Gif-sur-Yvette, France
partially2-D gels for maritime pine at INRA, Bordeaux, France
partially2-D PAGE of Medicago truncatula and other plants at The Samuel Roberts Noble Foundation, Ardmore, USA
otherThe GelMap Arabidopsis mitochondrial proteome project at Institute for Plant Genetics, Leibniz Universität Hannover, Germany
otherMt Proteomics - the symbiotic proteomics of Medicago truncatula roots at INRA, Epoisses, France
federatedCOMPLUYEAST-2DPAGE - 2-DE database (Candida albicans, Saccharomyces cerevisiae) at Universidad complutense Madrid, Spain
partiallyYMP - Yeast Mitochondrial Proteome at Proteomics Core Facility of the Biocenter Oulu, University of Oulu, Finland
partiallyYPM - Yeast Protein Map at Institut de Biochimie et Génétique Cellulaires, Bordeaux, France
Other Eukaryota
federatedKAIKO 2DDB - the Silkworm-2DPAGE (various organs, tissues at various developmental stages) from National Institute of Agrobiological Sciences, Japan
otherFishProm - 2DE gels from salmonid fish tissue extracts at University of Aberdeen, UK
Archaea, Bacteria, Viruses and Parasites
federated2DBase-Ecoli - A 2D-PAGE Database of Escherichia coli (various growing conditions) at University of Bielefeld - Fermentation Engineering Group (AGFT), Germany
federatedCGL14067-2DPAGE - A 2D-PAGE Database of Corynebacterium glutamicum ATCC14067 (several pI ranges) at Laboratory of Microbial Physiology, Hokkaido University, Japan
federatedNIBR 2D-PAGE - 2D-PAGE Database of Staphylococcus aureus Mu50 (several pI ranges) at Novartis Institutes for BioMedical Research, Basel, Switzerland
federatedPHCI-2DPAGE - Parasite host cell interaction 2D-PAGE database, at Department of Medical Microbioloy and Immunology, University of Aarhus, Denmark
federatedPlasmo2Dbase - Plasmodium falciparum 2-DE database at Indian Institute of Science, Bangalore, India
partiallyHelicobacter pylori Proteome 2-D Gel Database, at Kenyon College, Ohio, USA
partiallyListeria monocytogenes 2-DE maps, at INRA, Clermont-Ferrand, France
partiallyMethanococcus jannaschii 2D database,at Argonne protein mapping group server, Chicago, USA
partiallyPseudomonas syringae 2DE Maps,from Lee Research Group at Cornell University, USA
partiallySWICZ: Swiss-Czech Proteomics Server - developmental 2D-PAGE databases for Caulobacter crescentus, Streptomyces coelicolor, Streptomyces granaticolor, Neisseria meningitidis, at Inst. of Microbiology, Prague, Czech Republic
partially2-D PAGE Aberdeen (Haemophilus influenzae and Neisseria meningitidis), at Department of Medical Microbiology, University of Aberdeen, Scotland
Cell lines
partiallyTMIG-2DPAGE - Age-related Proteome Database at Tokyo Metropolitan Institute of Gerontology, Japan
Services Software
Local services from the ExPASy server are marked by local.
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