WORLD-2DPAGE List
Index to 2-D PAGE databases and services

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This page contains references to known 2-D PAGE database servers, as well as to 2-D PAGE related servers and services. You may also find related information in the Proteomics Links page of the Swiss Proteomics Society.

For a reference to federated 2-D PAGE database, see Appel et Al., Electrophoresis 17, 1996, 540-546, 1996.

[2-DE databases][Services & Software][Journals & Societies][Meetings]

2-DE databases
Guidelines for building a federated 2-DE database Add or remove a link from this list Database servers: federated partially federated other How to link to specific entry of these databases

Multi species
World-2DPAGE Portal		A dynamic portal to query simultaneously World-Wide gel-based proteomics databases
World-2DPAGE Repository		A public standards-compliant repository for gel-based proteomics data published in the literature
SWISS-2DPAGE	SIB Swiss Institute of Bioinformatics	Human	Liver, Plasma, HepG2, Red blood cells, Lymphoma, HepG2 Secreted Proteins, Cerebrospinal Fluid, Macrophage Like Cell Line (U937), Erythroleukemia Cell, Platelet, Kidney, Promyelocytic Leukemia Cells (HL60), Colorectal epithelia cells, Colorectal adenocarcinoma cell line (DL-1), Soluble nuclear proteins and matrix from liver tissue, Nucleoli from Hela cells (1D and 2D), Lymphocytes
		Mus musculus	Liver, Gastrocnemius muscle, Pancreatic islet cells, Brown adipose tissue, White adipose tissue, Soluble nuclear proteins and matrix from liver tissue
		Arabidopsis thaliana, Dictyostelium discoideum, Escherichia coli (several pI ranges and DIGE 4.5-6.5), Saccharomyces cerevisiae, Staphylococcus aureus (N315)
SIENA-2DPAGE	Department of Molecular Biology, University of Siena, Italy	Human	Breast ductal carcinoma and histologically normal tissue, Amniotic fluid
		Chlamydia trachomatis, Caenorhabditis elegans
UCD 2D-PAGE	The UCD Conway Institute Proteome Research Centre (CIPRC), University College Dublin, Ireland	Human	Brain cortex, Heart ventricle, Endothelial cell, Neutrophil,
		Dog	Heart ventricle
		Rat	Heart ventricle
		Mouse	Spinal cord
		Pig
		Guinea Pig
		Saccharomyces cerevisiae (Baker's yeast)
2-DE database	Max Planck Institute for Infection Biology, Berlin, Germany	Human	Jurkat T-cells, synovial fluid exosomes
		Mouse	Mammary gland, urea soluble lens proteins
		Rat	liver and muscle 20S proteasome subtype II & IV
		Bacillus amyloliquefaciens, Bacillus anthracis, Bartonella henselae, Borrelia garinii, Chlamydia pneumoniae, Chlamydophila pneumoniae, Francisella tularensis, Helicobacter pylori, Leishmania mexicana, Mycobacterium bovis, Mycobacterium tuberculosis, Mycoplasma pneumoniae, Paracoccus denitrificans, Vibrio cholerae
Mammalia
DOSAC-COBS 2D-PAGE	University of Palermo, Italy	Human	various breast cancer samples (cells, serum, etc.), dermal fibroblasts, mammary cells, lymphocytes, U937 and HL60 cell lines
RAT HEART-2DPAGE	German Heart Institute, Berlin, Germany	Rat	Heart
HEART-2DPAGE	German Heart Institute, Berlin, Germany	Human	Heart (ventricle, atrium)
HSC-2DPAGE	Heart Science Centre, Harefield Hospital, UK	Human	Heart (ventricle), endothelial cells
		Rat, Dog	Heart (ventricle)
HP-2DPAGE - Heart 2-DE Database	MDC & MPIIB, Berlin, Germany	Human	Heart (ventricule)
USC-OGP 2-DE database	University of Santiago de Compostela (USC), ES	Human	Platelet (various pI ranges), Uveal melanoma
REPRODUCTION-2DPAGE	Nanjing Medical University, P. R. China	Human	Ovary, Testis
	Mouse	Testis
Washington University Inner Ear Protein Database	Washington University, USA	Human	Perilymph
		Guinea pig	Endolymph, organ of Corti, otoconia, tectorial membrane
Toothprint - 2-DE gels of dental tissues	University of Otago, Dunedin, New Zealand	Rat	Enamel
JPLS Proteomics database	Ludwig Institute for Cancer Research, Melbourne, Australia	Human	Breast carcinoma cell line, Placenta, Colorectal cell line
		Mouse	colonic crypts
2-DE Map of Cerebrospinal Fluid Proteome	Lee Research Group at Cornell University, USA	Human	Cerebrospinal Fluid
2-DE maps	Proteomics and Protein Structure Study Group, at Milano University, Italy	Cow	Sera (during dioestrus), positive acute-phase reactants detected in serum from a cow with udder edema (inset C)
		Rat	Serum (control Sprague-Dawley (CD) female and male rats, turpentine-treated rats, diabetic rats, stroke-prone rats), urine (control female and male rats, stroke-prone rats), cerebrospinal fluid (control and stroke-prone rats)
		Mouse	Serum
HUVEC (Proteomics of Human Umbilical Vein Endothelial Cell)	Hopital Saint-Antoine, Paris, France	Human	Umbilical vein endothelial cell
Tooth Pulp 2-D	Proteomics Core Facility of the Biocenter Oulu, University of Oulu, Finland	Human	Tooth pulp tissue (healthy and carious)
Vascular Cell database	Department of Cardiac & Vascular Sciences, University of London, UK	Mouse	aortic smooth muscle cells, Sca-1+ progenitor cells, Embryonic Stem Cells
LECB 2D PAGE Gel Image Data Sets	CCR Nanobiology Program, USA	Human	leukemias (AML, ALL, CLL, HCL and other), HL-60 cell line, Molt-4 cell line, serum (Fetal Alchohol Syndrome, Rett Syndrome), Urine (cadmium-exposure, mercury-exposure) - 500 gel images

Plant

Proteome database - Tabacco BY-2 cell suspension culture, Musa meristem, Arabidopsis root at University of Antwerp, Belgium Rice Proteome Database at National Institute of Agrobiological Sciences, Japan Arabidopsis 2D gel at Institut des Sciences du Végétal, CNRS - Gif-sur-Yvette, France Arabidopsis Seed Proteome at INRA, Lyon, France GABI primary database - 2-DE database for 8 different Arabidospis thaliana tissues (inflorescence, stem, primary leaf, leaf, seed, seedling, silique, root) of the Genomanalyse im biologischen System Pflanze, Germany NASC Proteomics database for Arabidopsis data at the Nottingham Arabidopsis Stock Centre, University of Nottingham, UK Plant Proteomics database (PROTICdb) at UMR de Genetique Vegetale du Moulon, Gif-sur-Yvette, France 2-D gels for maritime pine at INRA, Bordeaux, France 2-D PAGE of Medicago truncatula and other plants at The Samuel Roberts Noble Foundation, Ardmore, USA The GelMap Arabidopsis mitochondrial proteome project at Institute for Plant Genetics, Leibniz Universität Hannover, Germany Mt Proteomics - the symbiotic proteomics of Medicago truncatula roots at INRA, Epoisses, France

Yeast

COMPLUYEAST-2DPAGE - 2-DE database (Candida albicans, Saccharomyces cerevisiae) at Universidad complutense Madrid, Spain YMP - Yeast Mitochondrial Proteome at Proteomics Core Facility of the Biocenter Oulu, University of Oulu, Finland YPM - Yeast Protein Map at Institut de Biochimie et Génétique Cellulaires, Bordeaux, France

Other Eukaryota

KAIKO 2DDB - the Silkworm-2DPAGE (various organs, tissues at various developmental stages) from National Institute of Agrobiological Sciences, Japan FishProm - 2DE gels from salmonid fish tissue extracts at University of Aberdeen, UK

Archaea, Bacteria, Viruses and Parasites

2DBase-Ecoli - A 2D-PAGE Database of Escherichia coli (various growing conditions) at University of Bielefeld - Fermentation Engineering Group (AGFT), Germany CGL14067-2DPAGE - A 2D-PAGE Database of Corynebacterium glutamicum ATCC14067 (several pI ranges) at Laboratory of Microbial Physiology, Hokkaido University, Japan NIBR 2D-PAGE - 2D-PAGE Database of Staphylococcus aureus Mu50 (several pI ranges) at Novartis Institutes for BioMedical Research, Basel, Switzerland PHCI-2DPAGE - Parasite host cell interaction 2D-PAGE database, at Department of Medical Microbioloy and Immunology, University of Aarhus, Denmark Plasmo2Dbase - Plasmodium falciparum 2-DE database at Indian Institute of Science, Bangalore, India Helicobacter pylori Proteome 2-D Gel Database, at Kenyon College, Ohio, USA Listeria monocytogenes 2-DE maps, at INRA, Clermont-Ferrand, France Methanococcus jannaschii 2D database,at Argonne protein mapping group server, Chicago, USA Pseudomonas syringae 2DE Maps,from Lee Research Group at Cornell University, USA SWICZ: Swiss-Czech Proteomics Server - developmental 2D-PAGE databases for Caulobacter crescentus, Streptomyces coelicolor, Streptomyces granaticolor, Neisseria meningitidis, at Inst. of Microbiology, Prague, Czech Republic 2-D PAGE Aberdeen (Haemophilus influenzae and Neisseria meningitidis), at Department of Medical Microbiology, University of Aberdeen, Scotland

Cell lines

TMIG-2DPAGE - Age-related Proteome Database at Tokyo Metropolitan Institute of Gerontology, Japan

Services	Software
Local services from the ExPASy server are marked by .
Laboratory services Proteomics Core Facility (previously known as SWISS-2DSERVICE) Bioinformatics Core Facility for Proteomics Education Proteomics course database maintained by the Swiss Proteomics Society Master's degree in Proteomics and Bioinformatics Proteomics courses - two courses covering Separation Sciences & Mass Spectrometry for Proteomics 2D gel electrophoresis tutorial by the Parasitology Group of the Aberystwyth University (Wales, UK) Indexes and Web services The World-2DPAGE Constellation - Promote and publish gel-based proteomics data through the ExPASy server 2DWG meta-database - Searchable catalog of 2D gel images found in Web databases Web 2D Electrophoretic Gel Databases FLICKER - Comparing images across the Internet CAROL - 2D Gel Matching program	Image analysis ImageMaster / Melanie - Software package for 2-D PAGE analysis MSight - A new vision in Mass Spectrometry Imaging GELLAB-II 2D Gel Analysis Software Web engine Make2D-DB II package - A package preparing the data and the programs necessary to build a federated 2-DE database on one's own web site. Other Isoelfocus - multimedia computer-aided learning program on Isoelectric Focusing
Related journals	Related societies
Proteomics Journal of Proteomics - Elsevier Proteomics journals list on the SPS web site	Swiss Proteomics Society Other related societies on the SPS web site

Related meetings

5th EuPA conference / 10th HUPO world congress / 8th SPS scientific meeting, Sep 4-7, 2011 - Geneva, Switzerland 8th Siena meeting - From Genome to Proteome: Integration and proteome completion, Aug 31-Sep 4, 2008, Siena, Italy Other related conferences on the SPS web site 2010 SPS Proteomics PhD Student Symposium, December 2010, Basel, Switzerland SPS'09: Proteome Dynamics: Protein Quantification in Time and Space, Dec 2-4, 2009, Zurich, Switzerland SPS'08: Applied Proteomics - Tips & Tricks, December 4, 2008, Geneva, Switzerland SPS'07: Pushing the limits, December 3-5, 2007, Lausanne, Switzerland SPS'06: Applied Proteomics - Tips & Tricks, December 3-4, 2006, Yverdon-les-Bains, Switzerland SPS'05: Expanding Proteomics - New directions in Biology, Chemistry, Pharmaceutical Sciences and Medecine, December 5-7, 2005, Zurich, Switzerland SPS'04: Proteomics for Health - From development to application, December 6-8, 2004, Bern, Switzerland SPS'03: Understanding biological systems through proteomics, December 2-4, 2003, Basel, Switzerland SPS'02: Applied Proteomics, December 3-5, 2002, Lausanne, Switzerland SPS'01: Functional Proteomics, 1st Scientific Meeting of the Swiss Proteomics Society Siena meeting'2008 : Scientific program and Posters Siena meeting'2006 : Scientific program, Posters Siena meeting'2004 : Scientific program Siena meeting'2002 : Scientific program, list of attendees Siena meeting'2000 : Scientific program, list of attendees Siena meeting'98 : scientific program, list of attendees, social pictures List of attendees to the Siena meeting'96 List of attendees to the Siena meeting'94