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World-2DPAGE Repository
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SWISS-2DPAGE
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Searching in 'World-2DPAGE Repository [0019]' for entry
matching:
HPCA_MOUSE
World-2DPAGE Repository
(0019):
HPCA_MOUSE
HPCA_MOUSE
General information about the entry
View entry in simple text format
Entry name
HPCA_MOUSE
Primary accession number
P84075
integrated into World-2DPAGE Repository (0019) on
December 9, 2009 (release 1)
2D Annotations were last modified on
May 30, 2011 (version 2)
General Annotations were last modified on
January 13, 2012 (version 2)
Name and origin of the protein
Description
RecName: Full=Neuron-specific calcium-binding protein hippocalcin;.
Gene name
Name=Hpca
Annotated species
Rattus norvegicus (Rat) [TaxID:
10116
]
Taxonomy
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus.
References
[1]
2D-PAGE GEL CHARACTERIZATION
DOI=
10.1111/j.1471-4159.2010.06719.x
;
VanGuilder H.D., Yan H., Farley J.A., Sonntag W.E., Freeman W.M.
''Aging alters the expression of neurotransmission-regulating proteins in the hippocampal synaptoproteome''
J of Neurochemistry 113(6):1577-1588 (2010)
2D PAGE maps for identified proteins
How to interpret a protein
HIPP_SYNAP
{Rat hippocampal synaptoproteome}
Rattus norvegicus (Rat)
Tissue: Hippocampus
map experimental info
HIPP_SYNAP
MAP LOCATIONS:
SPOT 871
:
pI=4.87; Mw=22527
[identification data]
SPOT 887
:
pI=4.87; Mw=22527
[identification data]
IDENTIFICATION:
SPOT 871: Peptides number=4. SeqCov=16.6%. MOWSE score=4.16E+2 [
1
]
SPOT 887: Peptides number=3. SeqCov=7.8%. MOWSE score=4.03E+2 [
1
].
MAPPING (identification):
SPOT
871
:
Peptide mass fingerprinting
[
1
];
Tandem mass spectrometry
[
1
];
SPOT
887
:
Peptide mass fingerprinting
[
1
];
Tandem mass spectrometry
[
1
].
Copyright
Data from Dr. Willard Freeman, Penn State College of Medicine, USA
Cross-references
UniProtKB/Swiss-Prot
P84075; HPCA_MOUSE.
2D PAGE maps for identified proteins
How to interpret a protein map
You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
Warning 1
: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
Warning 2
: the 2D PAGE map is built on demand. This may take some few seconds to be computed.
External data extracted from
UniProtKB/Swiss-Prot
Extracted from
UniProtKB/Swiss-Prot
, release:
2011_12
Entry name
HPCA_MOUSE
Primary accession number
P84075
Secondary accession number(s)
A2A7R4 P32076 P41211 P70510
Sequence was last modified on
January 23, 2007 (version 2)
Annotations were last modified on
September 21, 2011 (version 70)
Name and origin of the protein
Description
RecName: Full=Neuron-specific calcium-binding protein hippocalcin;
Gene name
Name=Hpca
Encoded on
Name=Hpca
Keywords
Calcium
;
Complete proteome
;
Lipoprotein
;
Myristate
;
Reference proteome
;
Repeat
.
Copyright
Copyrighted by the UniProt Consortium, see
https://www.uniprot.org/help/license
. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBL
AB015200; BAA74455.1
; -; Genomic_DNA
EMBL
AF326551; AAL37397.1
; -; mRNA
EMBL
AF326552; AAL37398.1
; -; mRNA
EMBL
AK002992; BAB22502.1
; -; mRNA
EMBL
AL606977; CAM19712.1
; -; Genomic_DNA
EMBL
BC049607; AAH49607.1
; -; mRNA
EMBL
BC058588; AAH58588.1
; -; mRNA
IPI
IPI00230310; -
; .
RefSeq
NP_001123891.1; NM_001130419.1
; .
RefSeq
NP_034601.1; NM_010471.3
; .
UniGene
Mm.384452; -
; .
ProteinModelPortal
P84075; -
; .
SMR
P84075; 5-185
; .
IntAct
P84075; 1
; .
PhosphoSite
P84075; -
; .
PRIDE
P84075; -
; .
Ensembl
ENSMUST00000030572; ENSMUSP00000030572
; ENSMUSG00000028785; .
Ensembl
ENSMUST00000095807; ENSMUSP00000093486
; ENSMUSG00000028785; .
Ensembl
ENSMUST00000116442; ENSMUSP00000112143
; ENSMUSG00000028785; .
Ensembl
ENSMUST00000116444; ENSMUSP00000112145
; ENSMUSG00000028785; .
Ensembl
ENSMUST00000164649; ENSMUSP00000129548
; ENSMUSG00000028785; .
GeneID
15444; -
; .
KEGG
mmu:15444; -
; .
UCSC
uc007ncx.1; mouse
; .
CTD
3208; -
; .
MGI
MGI:1336200; Hpca
; .
GeneTree
ENSGT00560000076803; -
; .
HOGENOM
HBG746798; -
; .
HOVERGEN
HBG108179; -
; .
InParanoid
P84075; -
; .
OMA
KEDESTP; -
; .
OrthoDB
EOG4G1MHC; -
; .
PhylomeDB
P84075; -
; .
NextBio
288236; -
; .
ArrayExpress
P84075; -
; .
Bgee
P84075; -
; .
CleanEx
MM_HPCA; -
; .
Genevestigator
P84075; -
; .
GermOnline
ENSMUSG00000028785; Mus musculus
; .
GO
GO:0003779; F:actin binding
; ISS:UniProtKB; .
GO
GO:0005509; F:calcium ion binding
; IEA:InterPro; .
InterPro
IPR018248; EF-hand
; .
InterPro
IPR011992; EF-hand-like_dom
; .
InterPro
IPR018247; EF_Hand_1_Ca_BS
; .
InterPro
IPR018249; EF_HAND_2
; .
InterPro
IPR002048; EF_hand_Ca-bd
; .
InterPro
IPR001125; Recoverin
; .
Gene3D
G3DSA:1.10.238.10; EF-Hand_type
; 1; .
Pfam
PF00036; efhand
; 3; .
PRINTS
PR00450; RECOVERIN
; .
SMART
SM00054; EFh
; 3; .
PROSITE
PS00018; EF_HAND_1
; 3; .
PROSITE
PS50222; EF_HAND_2
; 3; .
World-2DPAGE Repository (search AC)
Database constructed and maintained by
SIB
, using the
Make2D-DB II
package (
ver. 3.10.2
) from the
World-2DPAGE Constellation
of the
ExPASy web server