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World-2DPAGE Repository  Search by  [accession number]  [description, ID or gene]  [author names]  [spot ID / serial number]  [identification methods]  [pI / Mw range]  [combined fields]  Maps  [experimental info]  [protein list]  [graphical interface]      Databases 0001 0002 0003 0004 0005 0006 0007 0008 0009 0010 0011 0012 0014 0017 0018 0019 0020 0021 0022 0023 0024 0026 0027 0029 0030 0031 0032 0034 0035 0036 0037 0038 0039 0040 0042 0043 0044 0046 0047 0050 0051 0053 0054 0056 0059 0061 0062 0063 0066 0068 0069 0076 0077 0080 0084 0085 0088 use 'Ctrl' to select several databases Select Remote Interfaces [All Interfaces] SWISS-2DPAGE World-2DPAGE Portal Exclude local DBs has only effect if a remote interface is selected

Searching in 'World-2DPAGE Repository [0003]' for entry matching: O82660 World-2DPAGE Repository (0003):  O82660 O82660 General information about the entry View entry in simple text format Entry name P2SAF_ARATH Primary accession number O82660 integrated into World-2DPAGE Repository (0003) on  October 14, 2008 (release 1) 2D Annotations were last modified on May 18, 2011 (version 2) General Annotations were last modified on  November 15, 2011 (version 2) Name and origin of the protein Description RecName: Full=Photosystem II stability/assembly factor HCF136, chloroplastic; Flags: Precursor;. Gene name Name=HCF136 OrderedLocusNames=At5g23120 ORFNames=MYJ24.11 Annotated species Arabidopsis thaliana (Mouse-ear cress) [TaxID: 3702] Taxonomy Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core; eudicotyledons; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. References [1]   MAPPING ON GEL PubMed=18656559; DOI=10.1016/j.jprot.2008.06.012; [NCBI, EBI, Israel, Japan] Maldonado A.M., Echevarria-Zomeno S., Jean-Baptiste S., Hernandez M., Jorrin-Novo J.V. ''Evaluation of three different protocols of protein extraction for Arabidopsis thaliana leaf proteome analysis by two-dimensional electrophoresis'' J. Proteomics 71(4):461-472 (2008) 2D PAGE maps for identified proteins How to interpret a protein PHENOL_2 {Phenol 2} Arabidopsis thaliana (Mouse-ear cress) Tissue: Leaf   map experimental info   PHENOL_2 MAP LOCATIONS: SPOT 28: pI=5.82; Mw=41670   [identification data] IDENTIFICATION: SPOT 28: SeqCov=27%. Mascot (Protein score/CI%=195/100, Total ion score/CI%=123/100) [1]. MAPPING (identification): SPOT 28: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1]. TCA-ACETONE_3 {TCA-Acetone 3} Arabidopsis thaliana (Mouse-ear cress) Tissue: Leaf   map experimental info   TCA-ACETONE_3 MAP LOCATIONS: SPOT 28: pI=5.82; Mw=41670   [identification data] IDENTIFICATION: SPOT 28: SeqCov=27%. Mascot (Protein score/CI%=195/100, Total ion score/CI%=123/100) [1]. MAPPING (identification): SPOT 28: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1]. TCA-ACETONE-PHENOL_3 {TCA-Acetone-Phenol 3} Arabidopsis thaliana (Mouse-ear cress) Tissue: Leaf   map experimental info   TCA-ACETONE-PHENOL_3 MAP LOCATIONS: SPOT 28: pI=5.82; Mw=41670   [identification data] IDENTIFICATION: SPOT 28: SeqCov=27%. Mascot (Protein score/CI%=195/100, Total ion score/CI%=123/100) [1]. MAPPING (identification): SPOT 28: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1]. Copyright Data from Dr. Jesus V. Jorrin-Novo, University of Cordoba, Spain Cross-references UniProtKB/Swiss-Prot O82660; P2SAF_ARATH. World-2DPAGE Repository O82660; P2SAF_ARATH. 2D PAGE maps for identified proteins How to interpret a protein map You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw. Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly. Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed. External data extracted from UniProtKB/Swiss-Prot Extracted from UniProtKB/Swiss-Prot, release: 2011_10 Entry name P2SAF_ARATH Primary accession number O82660 Secondary accession number(s) Q56Z72 Sequence was last modified on  November 1, 1998 (version 1) Annotations were last modified on  September 21, 2011 (version 96) Name and origin of the protein Description RecName: Full=Photosystem II stability/assembly factor HCF136, chloroplastic; Flags: Precursor; Gene name Name=HCF136 OrderedLocusNames=At5g23120 ORFNames=MYJ24.11 Encoded on Name=HCF136; OrderedLocusNames=At5g23120; ORFNames=MYJ24.11 Keywords Chloroplast; Complete proteome; Direct protein sequencing; Membrane; Photosynthesis; Photosystem II; Plastid; Reference proteome; Repeat; Thylakoid; Transit peptide. Copyright Copyrighted by the UniProt Consortium, see https://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License Cross-references EMBL Y15628; CAA75723.1; -; mRNA EMBL AB006708; BAB09829.1; -; Genomic_DNA EMBL CP002688; AED93124.1; -; Genomic_DNA EMBL AY045691; AAK74049.1; -; mRNA EMBL BT004549; AAO42795.1; -; mRNA EMBL AK221097; BAD94976.1; -; mRNA IPI IPI00539527; -; . PIR T51828; T51828; . RefSeq NP_197703.1; NM_122218.2; . UniGene At.5360; -; . ProteinModelPortal O82660; -; . SMR O82660; 82-403; . STRING O82660; -; . World-2DPAGE 0003:O82660; -; . PRIDE O82660; -; . ProMEX O82660; -; . EnsemblPlants AT5G23120.1; AT5G23120.1; AT5G23120; . GeneID 832376; -; . GenomeReviews BA000015_GR; AT5G23120; . KEGG ath:AT5G23120; -; . NMPDR fig|3702.1.peg.24483; -; . TAIR At5g23120; -; . eggNOG KOG3511; -; . GeneTree EPGT00050000012421; -; . HOGENOM HBG285032; -; . InParanoid O82660; -; . OMA GFLVGSN; -; . ProtClustDB PLN00033; -; . ArrayExpress O82660; -; . Genevestigator O82660; -; . GermOnline AT5G23120; Arabidopsis thaliana; . GO GO:0009533; C:chloroplast stromal thylakoid; IDA:TAIR; . GO GO:0009535; C:chloroplast thylakoid membrane; IDA:TAIR; . GO GO:0009523; C:photosystem II; IEA:UniProtKB-KW; . GO GO:0031977; C:thylakoid lumen; IDA:TAIR; . GO GO:0015979; P:photosynthesis; IEA:UniProtKB-KW; . GO GO:0009657; P:plastid organization; IMP:TAIR; . GO GO:0006461; P:protein complex assembly; IMP:TAIR; . GO GO:0046686; P:response to cadmium ion; IEP:TAIR; . InterPro IPR002860; BNR_rpt; . InterPro IPR016705; PSII_HCF136_stabil/assmbl_fac; . Pfam PF02012; BNR; 4; . PIRSF PIRSF017875; PSII_HCF136; 1; . World-2DPAGE Repository (search AC)