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Searching in 'World-2DPAGE Repository [0022]' for entry matching: ODBB_RAT




World-2DPAGE Repository (0022):  ODBB_RAT

ODBB_RAT


General information about the entry
View entry in simple text format
Entry nameODBB_RAT
Primary accession numberP35738
integrated into World-2DPAGE Repository (0022) on May 7, 2010 (release 1)
2D Annotations were last modified onJune 22, 2011 (version 2)
General Annotations were last modified on November 24, 2011 (version 2)
Name and origin of the protein
DescriptionRecName: Full=2-oxoisovalerate dehydrogenase subunit beta, mitochondrial; EC=1.2.4.4; AltName: Full=Branched-chain alpha-keto acid dehydrogenase E1 component beta chain; Short=BCKDE1B; Short=BCKDH E1-beta; Flags: Precursor;.
Gene nameName=Bckdhb
Annotated speciesRattus [TaxID: 10114]
TaxonomyEukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae.
References
[1]   2D-PAGE GEL CHARACTERIZATION
DOI=10.1002/pmic.201000593;
Burniston J.G., Kenyani J., Wastling J.M., Burant C.F., Qi N.R., Koch L.G., Britton S.L.
''Proteomic analysis reveals perturbed energy metabolism and elevated oxidative stress in hearts of rats with inborn low aerobic capacity''
Proteomics 11(16):3369-3379 (2011)
2D PAGE maps for identified proteins
How to interpret a protein

HCR_LCR_HEART {HCR LCR Cardiac Map}
Rattus
Tissue: Heart
HCR_LCR_HEART
  map experimental info 		 
HCR_LCR_HEART

MAP LOCATIONS:
pI=6.41; Mw=43537  [identification data]

IDENTIFICATION: SPOT 923: SeqCov=25.9%. Peptides MS=9/20. Mascot PMF Score=80 [1].
PEPTIDE EVIDENCE: SPOT 923: 169-SGDLFNCGSLTIR-181 (73) / 86-DPTAVIFGEDVAFGGVFR-103 (133) / 49-VAHFTFQPDPESLQYGQTQK-68 (102) [1].
MAPPING (identification):
SPOT 923: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1].

Copyright
Data from Dr. Jatin Burniston, Liverpool John Moores University, UK
Cross-references
UniProtKB/Swiss-ProtP35738; ODBB_RAT.



2D PAGE maps for identified proteins
  • How to interpret a protein map
  • You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
  • Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
  • Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed.



External data extracted from UniProtKB/Swiss-Prot
Extracted from UniProtKB/Swiss-Prot, release: 2011_11
Entry nameODBB_RAT
Primary accession numberP35738
Sequence was last modified on December 4, 2007 (version 3)
Annotations were last modified on November 16, 2011 (version 91)
Name and origin of the protein
DescriptionRecName: Full=2-oxoisovalerate dehydrogenase subunit beta, mitochondrial; EC=1.2.4.4; AltName: Full=Branched-chain alpha-keto acid dehydrogenase E1 component beta chain; Short=BCKDE1B; Short=BCKDH E1-beta; Flags: Precursor;
Gene nameName=Bckdhb
Encoded onName=Bckdhb
KeywordsAcetylation; Complete proteome; Direct protein sequencing; Mitochondrion; Oxidoreductase; Reference proteome; Transit peptide.
Copyright
Copyrighted by the UniProt Consortium, see https://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBLAABR03062593; -; NOT_ANNOTATED_CDS; Genomic_DNA
EMBLAABR03062720; -; NOT_ANNOTATED_CDS; Genomic_DNA
EMBLAABR03063125; -; NOT_ANNOTATED_CDS; Genomic_DNA
EMBLAABR03063398; -; NOT_ANNOTATED_CDS; Genomic_DNA
EMBLM94040; AAA73899.1; ALT_SEQ; mRNA
IPIIPI00201636; -; .
PIRS28950; S28950; .
RefSeqNP_062140.1; NM_019267.1; .
UniGeneRn.15623; -; .
ProteinModelPortalP35738; -; .
SMRP35738; 65-390; .
STRINGP35738; -; .
PRIDEP35738; -; .
EnsemblENSRNOT00000013249; ENSRNOP00000013249; ENSRNOG00000009928; .
GeneID29711; -; .
KEGGrno:29711; -; .
CTD594; -; .
RGD2197; Bckdhb; .
eggNOGroNOG05452; -; .
GeneTreeENSGT00530000063423; -; .
HOVERGENHBG108210; -; .
InParanoidP35738; -; .
OrthoDBEOG4HQDJN; -; .
NextBio610143; -; .
ArrayExpressP35738; -; .
GenevestigatorP35738; -; .
GOGO:0005947; C:mitochondrial alpha-ketoglutarate dehydrogenase complex; ISS:HGNC; .
GOGO:0003863; F:3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity; IEA:EC; .
GOGO:0032403; F:protein complex binding; IPI:RGD; .
GOGO:0009083; P:branched chain family amino acid catabolic process; ISS:HGNC; .
GOGO:0051591; P:response to cAMP; IEP:RGD; .
GOGO:0051384; P:response to glucocorticoid stimulus; IEP:RGD; .
GOGO:0007584; P:response to nutrient; IEP:RGD; .
InterProIPR009014; Transketo_C/Pyr-ferredox_oxred; .
InterProIPR015941; Transketolase-like_C; .
InterProIPR005475; Transketolase-like_Pyr-bd; .
InterProIPR005476; Transketolase_C; .
Gene3DG3DSA:3.40.50.920; Transketo_C_like; 1; .
KOK00167; -; .
PfamPF02779; Transket_pyr; 1; .
PfamPF02780; Transketolase_C; 1; .
SMARTSM00861; Transket_pyr; 1; .
SUPFAMSSF52922; Transketo_C_like; 1; .


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Database constructed and maintained by SIB, using the Make2D-DB II package (ver. 3.10.2) from the World-2DPAGE Constellation of the ExPASy web server