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World-2DPAGE Repository
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Searching in 'World-2DPAGE Repository [0004]' for entry
matching:
P28073
World-2DPAGE Repository
(0004):
P28073
P28073
General information about the entry
View entry in simple text format
Entry name
PSB6_RAT
Primary accession number
P28073
integrated into World-2DPAGE Repository (0004) on
October 13, 2008 (release 1)
2D Annotations were last modified on
May 18, 2011 (version 2)
General Annotations were last modified on
December 22, 2011 (version 2)
Name and origin of the protein
Description
RecName: Full=Proteasome subunit beta type-6; EC=3.4.25.1; AltName: Full=Macropain delta chain; AltName: Full=Multicatalytic endopeptidase complex delta chain; AltName: Full=Proteasome chain 5; AltName: Full=Proteasome delta chain; AltName: Full=Proteasome subunit Y; Flags: Precursor;.
Gene name
Name=Psmb6
Synonyms=Psmb6l
Annotated species
Rattus norvegicus (Rat) [TaxID:
10116
]
Taxonomy
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus.
References
[1]
MAPPING ON GEL
PubMed=19343716; DOI=
10.1002/pmic.200800664
; [
NCBI
,
EBI
,
Israel
,
Japan
]
Maurya D.K., Sundaram C.S., Bhargava P.
''Proteome profile of the mature rat olfactory bulb''
Proteomics 9(1):2593-2599 (2009)
2D PAGE maps for identified proteins
How to interpret a protein
OB21DSUB
{2-DE gel for Olfactory bulb proteome}
Rattus norvegicus (Rat)
Tissue: Olfactory bulb
map experimental info
OB21DSUB
MAP LOCATIONS:
SPOT 705
:
pI=5.08; Mw=20000
[identification data]
MAPPING (identification):
SPOT
705
:
Peptide mass fingerprinting
[
1
];
Tandem mass spectrometry
[
1
].
Copyright
Data from Dr. Purnima Bhargava, Centre for Cellular and Molecular Biology, India
Cross-references
UniProtKB/Swiss-Prot
P28073; PSB6_RAT.
2D PAGE maps for identified proteins
How to interpret a protein map
You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
Warning 1
: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
Warning 2
: the 2D PAGE map is built on demand. This may take some few seconds to be computed.
External data extracted from
UniProtKB/Swiss-Prot
Extracted from
UniProtKB/Swiss-Prot
, release:
2011_12
Entry name
PSB6_RAT
Primary accession number
P28073
Secondary accession number(s)
Q6IE68 Q6PDW5
Sequence was last modified on
December 20, 2005 (version 3)
Annotations were last modified on
November 16, 2011 (version 108)
Name and origin of the protein
Description
RecName: Full=Proteasome subunit beta type-6; EC=3.4.25.1; AltName: Full=Macropain delta chain; AltName: Full=Multicatalytic endopeptidase complex delta chain; AltName: Full=Proteasome chain 5; AltName: Full=Proteasome delta chain; AltName: Full=Proteasome subunit Y; Flags: Precursor;
Gene name
Name=Psmb6
Synonyms=Psmb6l
Encoded on
Name=Psmb6; Synonyms=Psmb6l
Keywords
Acetylation
;
Complete proteome
;
Cytoplasm
;
Direct protein sequencing
;
Hydrolase
;
Nucleus
;
Protease
;
Proteasome
;
Reference proteome
;
Threonine protease
;
Zymogen
.
Copyright
Copyrighted by the UniProt Consortium, see
https://www.uniprot.org/help/license
. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBL
BC058451; AAH58451.1
; -; mRNA
EMBL
AABR03076595; -
; NOT_ANNOTATED_CDS; Genomic_DNA
EMBL
D10754; BAA01586.1
; ALT_INIT; mRNA
EMBL
BN000325; CAE48380.1
; -; mRNA
IPI
IPI00471722; -
; .
PIR
JX0228; JX0228
; .
PIR
S09086; S09086
; .
RefSeq
NP_476440.2; NM_057099.2
; .
RefSeq
XP_002725989.1; XM_002725943.1
; .
RefSeq
XP_002729074.1; XM_002729028.1
; .
UniGene
Rn.8118; -
; .
ProteinModelPortal
P28073; -
; .
SMR
P28073; 34-235
; .
IntAct
P28073; 1
; .
STRING
P28073; -
; .
World-2DPAGE
0004:P28073; -
; .
PRIDE
P28073; -
; .
Ensembl
ENSRNOT00000015746; ENSRNOP00000015747
; ENSRNOG00000011827; .
Ensembl
ENSRNOT00000026507; ENSRNOP00000026507
; ENSRNOG00000019551; .
GeneID
100360846; -
; .
GeneID
100364558; -
; .
GeneID
29666; -
; .
KEGG
rno:100360846; -
; .
KEGG
rno:100364558; -
; .
KEGG
rno:29666; -
; .
NMPDR
fig|10116.3.peg.5412; -
; .
UCSC
D10754; rat
; .
CTD
5694; -
; .
RGD
61881; Psmb6
; .
eggNOG
roNOG08605; -
; .
GeneTree
ENSGT00510000046484; -
; .
HOVERGEN
HBG000123; -
; .
InParanoid
P28073; -
; .
OMA
NELPTFY; -
; .
OrthoDB
EOG40CHHX; -
; .
PhylomeDB
P28073; -
; .
NextBio
609975; -
; .
Genevestigator
P28073; -
; .
GermOnline
ENSRNOG00000019551; Rattus norvegicus
; .
GO
GO:0005737; C:cytoplasm
; IEA:UniProtKB-SubCell; .
GO
GO:0005634; C:nucleus
; IEA:UniProtKB-SubCell; .
GO
GO:0005839; C:proteasome core complex
; IEA:InterPro; .
GO
GO:0004298; F:threonine-type endopeptidase activity
; IEA:UniProtKB-KW; .
GO
GO:0051603; P:proteolysis involved in cellular protein catabolic process
; IEA:InterPro; .
InterPro
IPR000243; Pept_T1A_subB
; .
InterPro
IPR016050; Proteasome_bsu_CS
; .
InterPro
IPR001353; Proteasome_sua/b
; .
InterPro
IPR023333; Proteasome_suB-type
; .
KO
K02738; -
; .
Pfam
PF00227; Proteasome
; 1; .
PRINTS
PR00141; PROTEASOME
; .
PROSITE
PS00854; PROTEASOME_B_1
; 1; .
PROSITE
PS51476; PROTEASOME_B_2
; 1; .
World-2DPAGE Repository (search AC)
Database constructed and maintained by
SIB
, using the
Make2D-DB II
package (
ver. 3.10.2
) from the
World-2DPAGE Constellation
of the
Expasy web server