World-2DPAGE Repository

Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus.

References

[1]	2D-PAGE GEL CHARACTERIZATION DOI=10.1002/pmic.200900680; Maurya D.K., Sundaram C.S., Bhargava P. ''Proteome profile of whole cerebellum of the mature rat'' Proteomics 10(23):4311-4319 (2010)

2D PAGE maps for identified proteins

How to interpret a protein

RAT_CEREBELLUM_21D {Proteome of 21 days old rat cerebellum}
Rattus norvegicus (Rat)
Tissue: Cerebellum

map experimental info

RAT_CEREBELLUM_21D

MAP LOCATIONS:

SPOT 2712:

pI=5.11; Mw=78000

[identification data]

IDENTIFICATION: SPOT 2712: SeqCov=20%. MascotPMF=56 [1].
MAPPING (identification):

SPOT 2712: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1].

Copyright

Data from Dr. Purnima Bhargava, Centre for Cellular and Molecular Biology, India

Cross-references

PRIDE

10017.

UniProtKB/Swiss-Prot

P34058; HS90B_RAT.

2D PAGE maps for identified proteins
How to interpret a protein map You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw. Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly. Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed.

External data extracted from UniProtKB/Swiss-Prot
Extracted from UniProtKB/Swiss-Prot, release: 2011_11
Entry name	HS90B_RAT
Primary accession number	P34058
Secondary accession number(s)	Q1PSW2 Q66H55 Q68GV5 Q9QWC6
Sequence was last modified on	January 23, 2007 (version 4)
Annotations were last modified on	November 16, 2011 (version 115)
Name and origin of the protein
Description	RecName: Full=Heat shock protein HSP 90-beta; AltName: Full=Heat shock 84 kDa; Short=HSP 84; Short=HSP84;
Gene name	Name=Hsp90ab1 Synonyms=Hsp84, Hspcb
Encoded on	Name=Hsp90ab1; Synonyms=Hsp84, Hspcb
Keywords	Acetylation; ATP-binding; Chaperone; Complete proteome; Cytoplasm; Direct protein sequencing; Nucleotide-binding; Phosphoprotein; Reference proteome; S-nitrosylation; Stress response; Ubl conjugation.
Copyright
Copyrighted by the UniProt Consortium, see https://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBL	S45392; AAB23369.1; -; mRNA
EMBL	AY695392; AAT99568.1; -; mRNA
EMBL	AY695393; AAT99569.1; -; mRNA
EMBL	DQ022068; ABE27999.1; -; Genomic_DNA
EMBL	BC082009; AAH82009.1; -; mRNA
IPI	IPI00471584; -; .
PIR	S71306; S71306; .
RefSeq	NP_001004082.3; NM_001004082.3; .
UniGene	Rn.98667; -; .
ProteinModelPortal	P34058; -; .
SMR	P34058; 8-691; .
IntAct	P34058; 4; .
MINT	MINT-4576429; -; .
STRING	P34058; -; .
PhosphoSite	P34058; -; .
World-2DPAGE	0004:P34058; -; .
PRIDE	P34058; -; .
Ensembl	ENSRNOT00000026920; ENSRNOP00000026920; ENSRNOG00000019834; .
GeneID	301252; -; .
KEGG	rno:301252; -; .
UCSC	NM_001004082; rat; .
CTD	3326; -; .
RGD	1303075; Hsp90ab1; .
eggNOG	roNOG11308; -; .
GeneTree	ENSGT00550000074382; -; .
HOVERGEN	HBG007374; -; .
InParanoid	P34058; -; .
OMA	GFSKNIK; -; .
OrthoDB	EOG42V8FM; -; .
PhylomeDB	P34058; -; .
NextBio	648395; -; .
ArrayExpress	P34058; -; .
Genevestigator	P34058; -; .
GermOnline	ENSRNOG00000019834; Rattus norvegicus; .
GO	GO:0016324; C:apical plasma membrane; IDA:RGD; .
GO	GO:0016323; C:basolateral plasma membrane; IDA:RGD; .
GO	GO:0031526; C:brush border membrane; IDA:RGD; .
GO	GO:0005829; C:cytosol; IDA:RGD; .
GO	GO:0042470; C:melanosome; IEA:UniProtKB-SubCell; .
GO	GO:0005625; C:soluble fraction; IDA:RGD; .
GO	GO:0005524; F:ATP binding; IDA:RGD; .
GO	GO:0002135; F:CTP binding; IDA:RGD; .
GO	GO:0032564; F:dATP binding; IDA:RGD; .
GO	GO:0005525; F:GTP binding; IDA:RGD; .
GO	GO:0051082; F:unfolded protein binding; IEA:InterPro; .
GO	GO:0002134; F:UTP binding; IDA:RGD; .
GO	GO:0071407; P:cellular response to organic cyclic compound; IEP:RGD; .
GO	GO:0006457; P:protein folding; TAS:RGD; .
GO	GO:0009651; P:response to salt stress; IEP:RGD; .
GO	GO:0006986; P:response to unfolded protein; TAS:RGD; .
InterPro	IPR003594; ATPase-like_ATP-bd; .
InterPro	IPR019805; Heat_shock_protein_90_CS; .
InterPro	IPR001404; Hsp90; .
InterPro	IPR020575; Hsp90_N; .
InterPro	IPR020568; Ribosomal_S5_D2-typ_fold; .
Gene3D	G3DSA:3.30.565.10; ATP_bd_ATPase; 2; .
KO	K04079; -; .
PANTHER	PTHR11528; Hsp90; 1; .
Pfam	PF02518; HATPase_c; 1; .
Pfam	PF00183; HSP90; 1; .
PIRSF	PIRSF002583; Hsp90; 1; .
PRINTS	PR00775; HEATSHOCK90; .
SMART	SM00387; HATPase_c; 1; .
SUPFAM	SSF55874; ATP_bd_ATPase; 1; .
SUPFAM	SSF54211; Ribosomal_S5_D2-typ_fold; 1; .
PROSITE	PS00298; HSP90; 1; .

World-2DPAGE Repository (search AC)

Database constructed and maintained by SIB, using the Make2D-DB II package (ver. 3.10.2) from the World-2DPAGE Constellation of the Expasy web server

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