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World-2DPAGE Repository
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SWISS-2DPAGE
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Searching in 'World-2DPAGE Repository [0004]' for entry
matching:
P60901
World-2DPAGE Repository
(0004):
P60901
P60901
General information about the entry
View entry in simple text format
Entry name
PSA6_RAT
Primary accession number
P60901
integrated into World-2DPAGE Repository (0004) on
October 13, 2008 (release 1)
2D Annotations were last modified on
May 18, 2011 (version 2)
General Annotations were last modified on
December 22, 2011 (version 2)
Name and origin of the protein
Description
RecName: Full=Proteasome subunit alpha type-6; EC=3.4.25.1; AltName: Full=Macropain iota chain; AltName: Full=Multicatalytic endopeptidase complex iota chain; AltName: Full=Proteasome iota chain;.
Gene name
Name=Psma6
Annotated species
Rattus norvegicus (Rat) [TaxID:
10116
]
Taxonomy
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus.
References
[1]
MAPPING ON GEL
PubMed=19343716; DOI=
10.1002/pmic.200800664
; [
NCBI
,
EBI
,
Israel
,
Japan
]
Maurya D.K., Sundaram C.S., Bhargava P.
''Proteome profile of the mature rat olfactory bulb''
Proteomics 9(1):2593-2599 (2009)
2D PAGE maps for identified proteins
How to interpret a protein
OB21DSUB
{2-DE gel for Olfactory bulb proteome}
Rattus norvegicus (Rat)
Tissue: Olfactory bulb
map experimental info
OB21DSUB
MAP LOCATIONS:
SPOT 630
:
pI=6.29; Mw=27000
[identification data]
MAPPING (identification):
SPOT
630
:
Peptide mass fingerprinting
[
1
];
Tandem mass spectrometry
[
1
].
Copyright
Data from Dr. Purnima Bhargava, Centre for Cellular and Molecular Biology, India
Cross-references
UniProtKB/Swiss-Prot
P60901; PSA6_RAT.
2D PAGE maps for identified proteins
How to interpret a protein map
You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw.
Warning 1
: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly.
Warning 2
: the 2D PAGE map is built on demand. This may take some few seconds to be computed.
External data extracted from
UniProtKB/Swiss-Prot
Extracted from
UniProtKB/Swiss-Prot
, release:
2011_12
Entry name
PSA6_RAT
Primary accession number
P60901
Secondary accession number(s)
P34062
Sequence was last modified on
April 13, 2004 (version 1)
Annotations were last modified on
November 16, 2011 (version 77)
Name and origin of the protein
Description
RecName: Full=Proteasome subunit alpha type-6; EC=3.4.25.1; AltName: Full=Macropain iota chain; AltName: Full=Multicatalytic endopeptidase complex iota chain; AltName: Full=Proteasome iota chain;
Gene name
Name=Psma6
Encoded on
Name=Psma6
Keywords
Acetylation
;
Complete proteome
;
Cytoplasm
;
Direct protein sequencing
;
Hydrolase
;
Isopeptide bond
;
Nucleus
;
Phosphoprotein
;
Protease
;
Proteasome
;
Reference proteome
;
Threonine protease
;
Ubl conjugation
.
Copyright
Copyrighted by the UniProt Consortium, see
https://www.uniprot.org/help/license
. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBL
D10755; BAA01587.1
; -; mRNA
EMBL
BC062232; AAH62232.1
; -; mRNA
IPI
IPI00191501; -
; .
PIR
JX0230; JX0230
; .
RefSeq
NP_058979.1; NM_017283.2
; .
UniGene
Rn.107278; -
; .
ProteinModelPortal
P60901; -
; .
SMR
P60901; 2-245
; .
IntAct
P60901; 1
; .
STRING
P60901; -
; .
MEROPS
T01.971; -
; .
PhosphoSite
P60901; -
; .
World-2DPAGE
0004:P60901; -
; .
PRIDE
P60901; -
; .
Ensembl
ENSRNOT00000009666; ENSRNOP00000009666
; ENSRNOG00000007114; .
GeneID
29673; -
; .
KEGG
rno:29673; -
; .
UCSC
NM_017283; rat
; .
CTD
5687; -
; .
RGD
61849; Psma6
; .
eggNOG
roNOG06143; -
; .
GeneTree
ENSGT00550000074807; -
; .
HOVERGEN
HBG107363; -
; .
InParanoid
P60901; -
; .
OMA
GKDCAVV; -
; .
OrthoDB
EOG4BP1CH; -
; .
PhylomeDB
P60901; -
; .
NextBio
610003; -
; .
ArrayExpress
P60901; -
; .
Genevestigator
P60901; -
; .
GermOnline
ENSRNOG00000007114; Rattus norvegicus
; .
GO
GO:0016363; C:nuclear matrix
; ISS:BHF-UCL; .
GO
GO:0005844; C:polysome
; ISS:BHF-UCL; .
GO
GO:0019773; C:proteasome core complex
; alpha-subunit complex; ISS:BHF-UCL
GO
GO:0030017; C:sarcomere
; IDA:BHF-UCL; .
GO
GO:0003723; F:RNA binding
; ISS:BHF-UCL; .
GO
GO:0004298; F:threonine-type endopeptidase activity
; IEA:UniProtKB-KW; .
GO
GO:0051092; P:positive regulation of NF-kappaB transcription factor activity
; ISS:BHF-UCL; .
GO
GO:0006511; P:ubiquitin-dependent protein catabolic process
; IEA:InterPro; .
InterPro
IPR000426; Proteasome_asu_CS
; .
InterPro
IPR023332; Proteasome_suA-type
; .
InterPro
IPR001353; Proteasome_sua/b
; .
KO
K02730; -
; .
Pfam
PF00227; Proteasome
; 1; .
Pfam
PF10584; Proteasome_A_N
; 1; .
SMART
SM00948; Proteasome_A_N
; 1; .
PROSITE
PS00388; PROTEASOME_A_1
; 1; .
PROSITE
PS51475; PROTEASOME_A_2
; 1; .
World-2DPAGE Repository (search AC)
Database constructed and maintained by
SIB
, using the
Make2D-DB II
package (
ver. 3.10.2
) from the
World-2DPAGE Constellation
of the
Expasy web server