World-2DPAGE Repository

Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus.

References

[1]	MAPPING ON GEL PubMed=19343716; DOI=10.1002/pmic.200800664; [NCBI, EBI, Israel, Japan] Maurya D.K., Sundaram C.S., Bhargava P. ''Proteome profile of the mature rat olfactory bulb'' Proteomics 9(1):2593-2599 (2009)

2D PAGE maps for identified proteins

How to interpret a protein

OB21DSUB {2-DE gel for Olfactory bulb proteome}
Rattus norvegicus (Rat)
Tissue: Olfactory bulb

map experimental info

OB21DSUB

MAP LOCATIONS:

SPOT 80:

pI=5.91; Mw=95000

[identification data]

MAPPING (identification):

SPOT 80: Peptide mass fingerprinting [1]; Tandem mass spectrometry [1].

Copyright

Data from Dr. Purnima Bhargava, Centre for Cellular and Molecular Biology, India

Cross-references

UniProtKB/Swiss-Prot

P85972; VINC_RAT.

2D PAGE maps for identified proteins
How to interpret a protein map You may obtain an estimated location of the protein on various 2D PAGE maps, provided the whole amino acid sequence is known. The estimation is obtained according to the computed protein's pI and Mw. Warning 1: the displayed region reflects an area around the theoretical pI and molecular weight of the protein and is only provided for the user's information. It should be used with caution, as the experimental and theoretical positions of a protein may differ significantly. Warning 2: the 2D PAGE map is built on demand. This may take some few seconds to be computed.

External data extracted from UniProtKB/Swiss-Prot
Extracted from UniProtKB/Swiss-Prot, release: 2011_12
Entry name	VINC_RAT
Primary accession number	P85972
Secondary accession number(s)	A6KKR4
Sequence was last modified on	September 2, 2008 (version 1)
Annotations were last modified on	December 14, 2011 (version 27)
Name and origin of the protein
Description	RecName: Full=Vinculin; AltName: Full=Metavinculin;
Gene name	Name=Vcl
Encoded on	Name=Vcl
Keywords	Acetylation; Actin-binding; Cell adhesion; Cell junction; Cell membrane; Complete proteome; Cytoplasm; Cytoskeleton; Lipoprotein; Membrane; Myristate; Palmitate; Phosphoprotein; Reference proteome; Repeat.
Copyright
Copyrighted by the UniProt Consortium, see https://www.uniprot.org/help/license. Distributed under the Creative Commons Attribution-NoDerivs License
Cross-references
EMBL	CH474061; EDL86258.1; -; Genomic_DNA
IPI	IPI00365286; -; .
RefSeq	NP_001100718.1; NM_001107248.1; .
UniGene	Rn.164613; -; .
MINT	MINT-6804299; -; .
STRING	P85972; -; .
PhosphoSite	P85972; -; .
World-2DPAGE	0004:P85972; -; .
PRIDE	P85972; -; .
Ensembl	ENSRNOT00000015179; ENSRNOP00000015179; ENSRNOG00000010765; .
GeneID	305679; -; .
KEGG	rno:305679; -; .
CTD	7414; -; .
RGD	1311217; Vcl; .
eggNOG	roNOG04310; -; .
GeneTree	ENSGT00550000074411; -; .
HOVERGEN	HBG079758; -; .
OMA	ELTHQVH; -; .
OrthoDB	EOG4P5K8C; -; .
PhylomeDB	P85972; -; .
Genevestigator	P85972; -; .
GO	GO:0015629; C:actin cytoskeleton; IEA:InterPro; .
GO	GO:0003779; F:actin binding; IEA:UniProtKB-KW; .
GO	GO:0017048; F:Rho GTPase binding; IPI:RGD; .
GO	GO:0005198; F:structural molecule activity; IEA:InterPro; .
InterPro	IPR017997; Vinculin; .
InterPro	IPR006077; Vinculin/catenin; .
InterPro	IPR000633; Vinculin_CS; .
KO	K05700; -; .
Pfam	PF01044; Vinculin; 2; .
PRINTS	PR00806; VINCULIN; .
SUPFAM	SSF47220; Vinculin/catenin; 7; .
PROSITE	PS00663; VINCULIN_1; 1; .
PROSITE	PS00664; VINCULIN_2; 3; .

World-2DPAGE Repository (search AC)

Database constructed and maintained by SIB, using the Make2D-DB II package (ver. 3.10.2) from the World-2DPAGE Constellation of the Expasy web server

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